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[193794_s_at] Actinin-type actin-binding domain containing proteins

Description C45G3.1 /REP_DB=WormBase Gene ID /WP=CE15710 /TR=O17666 /GB=CAB07174.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Actinin-type actin-binding domain containing proteins
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 59      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 468.1
(1.4)
P 		555.4
(3)
P 		520.3
(2.4)
P 		230.5
(-3)
P 		325
B 416.6
(1.3)
P 		505.1
(3)
P 		440.7
(1.7)
P 		199.3
(-3)
P 		306
C 511.3
(2.2)
P 		553.9
(3)
P 		543.6
(2.8)
P 		229.9
(-3)
P 		324
avr 465.3
(1.6) 		538.1
(3) 		501.5
(2.3) 		219.9
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 646
1 2 3 4 5 6 range
A 323.8
(-2.8)
P 		411
(-1.9)
P 		305.6
(-3)
P 		390.7
(-2.1)
P 		622.7
(0.4)
P 		860.2
(3)
P 		555
B 437.2
(-2.5)
P 		400.4
(-3)
P 		453.3
(-2.3)
P 		496.5
(-1.7)
P 		566.7
(-0.8)
P 		854.6
(3)
P 		454
C 405.8
(-2.9)
P 		393.4
(-3)
P 		396.1
(-3)
P 		503.2
(-1.8)
P 		447.2
(-2.4)
P 		951.9
(3)
P 		559
avr 388.9
(-3) 		401.6
(-2.8) 		385
(-3) 		463.5
(-2.1) 		545.5
(-1.1) 		888.9
(3) 		504
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 170.5
(3)
P 		120.6
(0.8)
P 		136
(1.5)
P 		33.7
(-3)
P 		137
B 132.8
(3)
P 		124.7
(2.5)
P 		102.1
(1)
P 		42.5
(-3)
P 		90
C 169.3
(2.2)
P 		159.2
(1.8)
P 		189.5
(3)
P 		38.8
(-3)
P 		151
avr 157.5
(3) 		134.8
(1.9) 		142.5
(2.2) 		38.3
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 59.7
(-3)
P 		146.2
(0.5)
P 		66.6
(-2.7)
P 		99.1
(-1.4)
P 		187.9
(2.1)
P 		209.4
(3)
P 		150
B 152.1
(-1.8)
P 		133.3
(-2.3)
P 		110.1
(-3)
P 		131.5
(-2.4)
P 		230.3
(0.5)
P 		318.7
(3)
P 		209
C 150.4
(-1.6)
P 		120
(-2.5)
P 		100.8
(-3)
P 		101.2
(-3)
P 		144.7
(-1.8)
P 		318.6
(3)
P 		218
avr 120.7
(-2.1) 		133.2
(-1.7) 		92.5
(-3) 		110.6
(-2.4) 		187.6
(0) 		282.2
(3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193794_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1557
Sequence Type Exemplar sequence
Representative Public ID C45G3.1 NCBI
Target Description C45G3.1 /REP_DB=WormBase Gene ID /WP=CE15710 /TR=O17666 /GB=CAB07174.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Actinin-type actin-binding domain containing proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060066 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-255) (tag-255) mRNA, complete cds. 11/11 None
SNAP00000024100 ENSEMBL cdna:SNAP chromosome:CEL140:I:9230131:9234507:-1 11/11 None
GENEFINDER00000024118 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9230131:9234507:-1 11/11 None
C45G3.1 ENSEMBL cdna:known chromosome:CEL140:I:9229968:9234510:-1 gene:C45G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9230061-9234438(-) 100.0 100.0
Public Domain and Genome References
Gene Title Actinin-type actin-binding domain containing proteins
Gene Symbol tag-255
Ensembl C45G3.1
Entrez Gene 172746 Entrez gene
SwissProt O17666 EMBL-EBI
WormBase CE15710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07174 Hypothetical protein C45G3.1 [Caenorhabditis elegans] ref|NP_492467.1| Temporarily Assigned Gene name family member (tag-255) [Caenorhabditis elegans] 0.0
blast CAE64574 Hypothetical protein CBG09326 [Caenorhabditis briggsae] 0.0
blast XP_614763 PREDICTED: similar to asp (abnormal spindle)-like, microcephaly associated, partial [Bos taurus] 4.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 2.7E-10
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 6.0E-8
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 6.0E-8
Sequence
Target Sequence 
>C. ELEGANS:193794_S_AT
aagaaatgcgctcttcatggactcacaaatgataaccttcacgtcgttcatgttgctgca
actgtcatcgaccgagtcaccgatcttgttccatcacttttggaaaagcttgtcgtcgaa
ctgaatggcatcaagtcgatcactgatgttttgattgtggcggatcgaggattctcttat
acgagcattcttcatccattattgaatgttctcgaaaaattattcacgaagattcccgaa
gaagtcaccaattcgcatattctccctcacttgaagattttgtcgcctcgcttgatgcta
ctgatgctgaagcactcggaagtcaaggaattgtttattcctatcattaacaccttgact
tcaattgctagaagattcccagacaaaaagcaatcgagtttttcttcatcaagctactca
atcaagcagtcgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAATGCGCTCTTCATGGACTCA 354 153 3067 Antisense
AACCTTCACGTCGTTCATGTTGCTG 478 147 3100 Antisense
CTGCAACTGTCATCGACCGAGTCAC 200 237 3122 Antisense
CCGATCTTGTTCCATCACTTTTGGA 698 263 3146 Antisense
GCTTGTCGTCGAACTGAATGGCATC 344 305 3174 Antisense
ATACGAGCATTCTTCATCCATTATT 576 23 3245 Antisense
GAAGTCACCAATTCGCATATTCTCC 281 337 3307 Antisense
GCATATTCTCCCTCACTTGAAGATT 670 307 3321 Antisense
CACTTGAAGATTTTGTCGCCTCGCT 308 197 3334 Antisense
GCAATCGAGTTTTTCTTCATCAAGC 112 323 3456 Antisense
AGCTACTCAATCAAGCAGTCGCTCA 655 77 3478 Antisense
Sequence Source Affymetrix Proprietary Database