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[193790_at]

Description F32B4.4 /REP_DB=WormBase Gene ID /WP=CE17744 /TR=O62203 /GB=CAB04233.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=RNA recognition motif. (aka RRM, RBD, or RNP domain)
Cluster 6grp_total > 11      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 10.5
(-3)
A 		34.8
(3)
A 		16.4
(-1.5)
A 		21.2
(-0.4)
A 		24
B 14.2
(-1.9)
A 		26.7
(3)
A 		14.5
(-1.8)
A 		11.4
(-3)
A 		15
C 14.1
(-2.5)
A 		20.6
(0.6)
A 		13.1
(-3)
A 		25.6
(3)
A 		13
avr 12.9
(-3) 		27.4
(3) 		14.7
(-2.3) 		19.4
(-0.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 11.7
(0.4)
A 		16.7
(3)
A 		10.6
(-0.2)
A 		5.3
(-2.9)
A 		5.2
(-3)
A 		5.8
(-2.7)
A 		12
B 28.2
(0.1)
A 		50.5
(3)
A 		26.9
(-0.1)
A 		4.5
(-3)
A 		7.3
(-2.6)
A 		8.1
(-2.5)
A 		46
C 5
(-3)
A 		12.8
(1.8)
A 		14.7
(3)
A 		12.9
(1.9)
A 		10.2
(0.2)
A 		10.8
(0.6)
A 		10
avr 15
(-0.7) 		26.7
(3) 		17.4
(0.1) 		7.6
(-3) 		7.6
(-3) 		8.2
(-2.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.8
(-2.1)
A 		7.6
(3)
A 		4.3
(-1.4)
A 		3.1
(-3)
A 		5
B 4.5
(0)
A 		6.6
(3)
A 		3.4
(-1.6)
A 		2.4
(-3)
A 		4
C 4.7
(-1.5)
A 		5.9
(3)
A 		4.6
(-1.9)
A 		4.3
(-3)
A 		2
avr 4.3
(-1.2) 		6.7
(3) 		4.1
(-1.6) 		3.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.2
(-1.8)
A 		5.9
(3)
A 		2.3
(-1.7)
A 		1.3
(-3)
A 		1.6
(-2.6)
A 		1.4
(-2.9)
A 		5
B 9.8
(0.3)
A 		16.8
(3)
A 		6.5
(-1)
A 		1.2
(-3)
A 		3
(-2.3)
A 		3
(-2.3)
A 		16
C 1.9
(-3)
A 		3.9
(3)
A 		3.7
(2.4)
A 		2.6
(-0.9)
A 		3.3
(1.2)
A 		3.6
(2.1)
A 		2
avr 4.6
(-0.6) 		8.9
(3) 		4.2
(-0.9) 		1.7
(-3) 		2.6
(-2.3) 		2.7
(-2.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2132
Sequence Type Exemplar sequence
Representative Public ID F32B4.4 NCBI
Target Description F32B4.4 /REP_DB=WormBase Gene ID /WP=CE17744 /TR=O62203 /GB=CAB04233.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=RNA recognition motif. (aka RRM, RBD, or RNP domain)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026270(11), NM_001026269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026270 NCBI Caenorhabditis elegans F32B4.4b (F32B4.4) mRNA, complete cds. 11/11 None
NM_001026269 NCBI Caenorhabditis elegans F32B4.4a (F32B4.4) mRNA, complete cds. 11/11 None
SNAP00000030036 ENSEMBL cdna:SNAP chromosome:CEL140:I:11529581:11534684:1 11/11 None
GENEFINDER00000030040 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11529581:11534684:1 11/11 None
F32B4.4b.2 ENSEMBL cdna:known chromosome:CEL140:I:11525709:11535414:1 gene:F32B4.4 11/11 None
F32B4.4b.1 ENSEMBL cdna:known chromosome:CEL140:I:11529955:11535414:1 gene:F32B4.4 11/11 None
F32B4.4a ENSEMBL cdna:known chromosome:CEL140:I:11530864:11534684:1 gene:F32B4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11530794-11534615(+) 98.7 100.0
Public Domain and Genome References
Ensembl F32B4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD98731 Hypothetical protein F32B4.4b [Caenorhabditis elegans] ref|NP_001021441.1| F32B4.4b [Caenorhabditis elegans] 0.0
blast CAB04233 Hypothetical protein F32B4.4a [Caenorhabditis elegans] ref|NP_001021440.1| F32B4.4a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.2E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.2E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-5
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.2E-10
Sequence
Target Sequence 
>C. ELEGANS:193790_AT
gtcgccaaactcggagatcaccatcaccaccgcaacagcatcacagtagttcgagaagac
agcgaagagatagcggcggagcaggccgttatcgccagtctacttcctcgtcgaactcta
atcgcaatagcaacagcggcggtcgtaaccttgtagtcactgccaccaccaccaacaaca
ccaacgccaccaatgctggaagatcttatgggattcaatcggtgccagacgctagctcgt
actctaccaacaactatcaacaacgatcgtcggccgcttctgcctatgatctacagatta
ctgcaactatgccacaagctggagccgccaattctggagcagcatatcatcagccgtatg
gaaatgtttatcagcataatactgccgcctatccagtgtggggaggacttgatgctcaag
gacacatggcaatggacactaattggtctcaaaatgctgcaactccatcgacatctacat
cttctggtggtggtggtggacaacaatggcaacagcaatcttatggaagtaatcaacatc
agcatcatcagaacaataactcgtctcaaccatcttcatcgaatcgacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCAAACTCGGAGATCACCATC 468 475 1703 Antisense
ACCACCGCAACAGCATCACAGTAGT 646 85 1728 Antisense
CTTCCTCGTCGAACTCTAATCGCAA 344 219 1805 Antisense
ATAGCAACAGCGGCGGTCGTAACCT 686 19 1829 Antisense
CACCAACGCCACCAATGCTGGAAGA 367 201 1881 Antisense
TAGCTCGTACTCTACCAACAACTAT 642 651 1935 Antisense
ACTATCAACAACGATCGTCGGCCGC 693 101 1955 Antisense
TGCCGCCTATCCAGTGTGGGGAGGA 586 583 2085 Antisense
CAAAATGCTGCAACTCCATCGACAT 65 191 2152 Antisense
GACATCTACATCTTCTGGTGGTGGT 525 369 2172 Antisense
TCAACCATCTTCATCGAATCGACGC 317 631 2268 Antisense
Sequence Source Affymetrix Proprietary Database