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[193788_at] guanine nucleotide bionding protein beta subunit

Description K04G11.4 /REP_DB=WormBase Gene ID /WP=CE11748 /TR=SW:Q93847 /GB=CAB01760.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=guanine nucleotide bionding protein beta subunit
Cluster 6grp_total > 13      4grp_total > 46      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 87.8
(3)
A 		48.1
(-3)
A 		56.2
(-1.8)
A 		62.1
(-0.9)
A 		40
B 89.3
(2.2)
P 		94.6
(3)
A 		52.5
(-3)
A 		85.2
(1.7)
P 		42
C 94
(3)
A 		64.7
(-1.2)
A 		77.6
(0.7)
A 		51.7
(-3)
A 		42
avr 90.4
(3) 		69.1
(-1.5) 		62.1
(-3) 		66.3
(-2.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 159.8
(3)
A 		68.6
(-1.3)
A 		46.1
(-2.4)
A 		75.1
(-1)
A 		50
(-2.2)
A 		33.8
(-3)
A 		126
B 112.9
(0.5)
A 		149
(3)
P 		103.8
(-0.2)
A 		78.2
(-2)
A 		82.2
(-1.7)
A 		64
(-3)
A 		85
C 74.6
(-1.8)
A 		134.4
(3)
A 		116
(1.5)
A 		97.3
(0)
A 		61.7
(-2.8)
A 		59
(-3)
A 		75
avr 115.8
(2.9) 		117.3
(3) 		88.6
(0.4) 		83.5
(-0.1) 		64.6
(-1.9) 		52.3
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 32
(3)
A 		10.4
(-2.7)
A 		14.7
(-1.5)
A 		9.1
(-3)
A 		23
B 28.5
(3)
P 		23.4
(1.1)
A 		12.2
(-3)
A 		18.2
(-0.8)
P 		16
C 31.1
(3)
A 		18.6
(-0.3)
A 		27
(1.9)
A 		8.7
(-3)
A 		22
avr 30.5
(3) 		17.5
(-1.2) 		18
(-1.1) 		12
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 29.5
(3)
A 		24.4
(1.6)
A 		10
(-2.5)
A 		19.1
(0.1)
A 		15.1
(-1.1)
A 		8.2
(-3)
A 		21
B 39.3
(0.9)
A 		49.6
(3)
P 		25.2
(-2.1)
A 		20.7
(-3)
A 		33.4
(-0.4)
A 		23.9
(-2.3)
A 		29
C 27.6
(-0.8)
A 		41
(3)
A 		29.5
(-0.2)
A 		19.6
(-3)
A 		20
(-2.9)
A 		19.7
(-3)
A 		21
avr 32.1
(1.2) 		38.3
(3) 		21.6
(-1.8) 		19.8
(-2.3) 		22.8
(-1.4) 		17.3
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17597
Sequence Type Exemplar sequence
Representative Public ID K04G11.4 NCBI
Target Description K04G11.4 /REP_DB=WormBase Gene ID /WP=CE11748 /TR=SW:Q93847 /GB=CAB01760.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=guanine nucleotide bionding protein beta subunit
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077993(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077993 NCBI Caenorhabditis elegans K04G11.4 (K04G11.4) mRNA, complete cds. 11/11 None
SNAP00000024615 ENSEMBL cdna:SNAP chromosome:CEL140:X:14350059:14351962:1 11/11 None
GENEFINDER00000024618 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14350059:14351962:1 11/11 None
K04G11.4 ENSEMBL cdna:known chromosome:CEL140:X:14350059:14352067:1 gene:K04G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14350058-14351962(+) 100.0 100.0
Public Domain and Genome References
Gene Title guanine nucleotide bionding protein beta subunit
Ensembl K04G11.4
Entrez Gene 181540 Entrez gene
SwissProt Q93847 EMBL-EBI
WormBase CE11748 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01760 Hypothetical protein K04G11.4 [Caenorhabditis elegans] ref|NP_510394.1| K04G11.4 [Caenorhabditis elegans] sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.4 IN chromosome X 0.0
blast CAA85487 Hypothetical protein C14B1.4 [Caenorhabditis elegans] ref|NP_497749.1| C14B1.4 [Caenorhabditis elegans] sp|Q17963|YKY4_CAEEL Hypothetical WD-repeat protein C14B1.4 in chromosome III 1.0E-120
blast CAE64482 Hypothetical protein CBG09206 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.9E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.1E-14
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.7E-13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-4
Sequence
Target Sequence 
>C. ELEGANS:193788_AT
tacgtgttctgctgttgtttcaacccttctggaacacttattgcctctggatcattcgat
gaaactattcgcatctggtgtgcacgcaatggaaacacgattttttcaattccaggccac
gaggatccggttagttccgtgtgttttaaccgcgacggagcatatctagcctcgggatcc
tacgatggaatagttcgaatttgggactcgactaccggcacttgtgtgaaaacgttgatc
gacgaagagcatcctccaatcacacatgtcaaattttcaccaaacggaaaatatatactt
gcctcaaacctcaacaatacactcaaactgtgggactaccaaaagctgagagtgctcaaa
gagtacaccgggcacgaaaattccaaatactgcgtggccgcgaatttttcggttactgga
ggtaaatggattgtcagcggctcggaagatcacaaagtgtatatctggaaccttcagaca
agagaaatccttcagacattagatggccataacactgctgtcatgtgcaccgattgtcac
ccaggacaaaacataattgcttctgccgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGTGTTCTGCTGTTGTTTCAACC 704 647 586 Antisense
GTTTCAACCCTTCTGGAACACTTAT 593 437 602 Antisense
GAACACTTATTGCCTCTGGATCATT 101 353 617 Antisense
TATTCGCATCTGGTGTGCACGCAAT 659 661 651 Antisense
GATTTTTTCAATTCCAGGCCACGAG 249 427 684 Antisense
GAGGATCCGGTTAGTTCCGTGTGTT 613 401 706 Antisense
AACCGCGACGGAGCATATCTAGCCT 28 147 733 Antisense
GATCGACGAAGAGCATCCTCCAATC 686 415 822 Antisense
ACTGCGTGGCCGCGAATTTTTCGGT 644 97 974 Antisense
ACTGCTGTCATGTGCACCGATTGTC 607 95 1099 Antisense
CAAAACATAATTGCTTCTGCCGCCC 407 191 1132 Antisense
Sequence Source Affymetrix Proprietary Database