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[193786_at]

Description T27C5.9 /REP_DB=WormBase Gene ID /WP=CE16503 /TR=O45853 /GB=CAB04870.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase)
Cluster 6grp_total > 09      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 4.2
(-3)
A 		68.8
(0.3)
A 		122.8
(3)
A 		17.5
(-2.3)
A 		119
B 50.4
(-0.2)
A 		14
(-3)
A 		93.2
(3)
A 		33.4
(-1.5)
A 		79
C 20.1
(-2.3)
A 		7.7
(-3)
A 		39.8
(-1.1)
A 		108.5
(3)
A 		101
avr 24.9
(-3) 		30.2
(-2.5) 		85.3
(3) 		53.1
(-0.2) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 106.7
(3)
A 		75.5
(0.9)
A 		29.5
(-2.1)
A 		24
(-2.5)
A 		18.7
(-2.9)
A 		16.7
(-3)
A 		90
B 32.1
(-0.6)
A 		2.8
(-3)
A 		40.3
(0)
A 		39.9
(-0)
A 		77.5
(3)
A 		47.1
(0.6)
A 		75
C 49.4
(0.3)
A 		31.9
(-1)
A 		30.6
(-1.1)
A 		87.5
(3)
A 		3.5
(-3)
A 		33.6
(-0.9)
A 		84
avr 62.7
(3) 		36.7
(-2.2) 		33.5
(-2.8) 		50.5
(0.6) 		33.2
(-2.9) 		32.5
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 1.5
(-3)
A 		14.9
(-0.4)
A 		32.1
(3)
A 		2.6
(-2.8)
A 		31
B 16.1
(1.2)
A 		3.4
(-3)
A 		21.6
(3)
A 		7.1
(-1.8)
A 		18
C 6.6
(-1.4)
A 		2.2
(-3)
A 		13.9
(1.4)
A 		18.3
(3)
A 		16
avr 8.1
(-2.5) 		6.8
(-3) 		22.5
(3) 		9.3
(-2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 19.7
(1.1)
A 		26.8
(3)
A 		6.4
(-2.4)
A 		6.1
(-2.5)
A 		5.7
(-2.6)
A 		4.1
(-3)
A 		23
B 11.2
(-1)
A 		0.9
(-3)
A 		9.8
(-1.3)
A 		10.6
(-1.1)
A 		31.5
(3)
A 		17.6
(0.3)
A 		31
C 18.3
(3)
A 		9.7
(0)
A 		7.8
(-0.7)
A 		17.6
(2.8)
A 		1.1
(-3)
A 		11.2
(0.5)
A 		17
avr 16.4
(3) 		12.5
(0.2) 		8
(-3) 		11.4
(-0.6) 		12.8
(0.4) 		11
(-0.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14702
Sequence Type Exemplar sequence
Representative Public ID T27C5.9 NCBI
Target Description T27C5.9 /REP_DB=WormBase Gene ID /WP=CE16503 /TR=O45853 /GB=CAB04870.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030298 ENSEMBL cdna:SNAP chromosome:CEL140:V:17425829:17430892:-1 11/11 None
GENEFINDER00000030302 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17425829:17430865:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024696 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024703 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17425828-17430865(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25352 hypothetical protein T27C5.9 - Caenorhabditis elegans 0.0
blast CAA82361 Hypothetical protein T26G10.4 [Caenorhabditis elegans] ref|NP_499071.1| T26G10.4 [Caenorhabditis elegans] sp|P34583|YN24_CAEEL Hypothetical protein T26G10.4 in chromosome III 1.0E-119
blast CAE65637 Hypothetical protein CBG10693 [Caenorhabditis briggsae] 8.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 1.7E-38
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.7E-59
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 1.7E-38
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.7E-59
Sequence
Target Sequence 
>C. ELEGANS:193786_AT
gcaaaactgtccgtttggtttctcaaagaagatcactgagaggcatgatgccgtcttgca
caaggtcaaaactctcattgaaagcggtggaaaaaagaattggacaatgaagattgatga
agaacttccaggattcagcagactccgtccagatatctgcctcaaaagccctgatgaaaa
acaaatcatcttggcagatgtcgcatgcccatatgagcatggagtagaagcgatggaaag
gagctggcaggcaaaaatcgacaaatacgagacgggattcgcccacctgcggaaatcggg
aaccaagctgaccgtccttccgattataatcgggtcacttggatcatggtggaaaccgac
aggtgacagtctcaaggaattgggaatcaagggaagcgtgatcaacagtgccattccaga
actctgtgctactgttctcgaacacagtaagaatacgtactggaatcacatcttcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAACTGTCCGTTTGGTTTCTCA 530 317 4347 Antisense
GCATGATGCCGTCTTGCACAAGGTC 89 311 4389 Antisense
GAACTTCCAGGATTCAGCAGACTCC 598 349 4468 Antisense
GCAGACTCCGTCCAGATATCTGCCT 343 313 4484 Antisense
ATATCTGCCTCAAAAGCCCTGATGA 485 19 4499 Antisense
CAGATGTCGCATGCCCATATGAGCA 89 207 4541 Antisense
TTCGCCCACCTGCGGAAATCGGGAA 655 639 4624 Antisense
CTGACCGTCCTTCCGATTATAATCG 694 237 4654 Antisense
GTGATCAACAGTGCCATTCCAGAAC 290 485 4744 Antisense
GAACTCTGTGCTACTGTTCTCGAAC 354 349 4765 Antisense
TACGTACTGGAATCACATCTTCGGT 171 649 4800 Antisense
Sequence Source Affymetrix Proprietary Database