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[193783_at]

Description ZK228.2 /REP_DB=WormBase Gene ID /WP=CE16711 /TR=O46008 /GB=CAB04994.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase)
Cluster 6grp_total > 43      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.8
(-0.8)
A 		5.5
(2.6)
A 		2.7
(-3)
A 		5.7
(3)
A 		3
B 1.8
(-3)
A 		2.2
(-2.2)
A 		4.9
(3)
A 		2.9
(-0.9)
A 		3
C 2
(-3)
A 		10.8
(3)
A 		3.5
(-2)
A 		6.8
(0.3)
A 		9
avr 2.5
(-3) 		6.2
(3) 		3.7
(-1.1) 		5.1
(1.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.7
(0.9)
A 		4.7
(0.9)
A 		5.4
(2.1)
A 		2.5
(-2.8)
A 		5.9
(3)
A 		2.4
(-3)
A 		4
B 5.9
(-0.5)
A 		2.4
(-2.6)
A 		11.8
(3)
A 		4.2
(-1.5)
A 		1.7
(-3)
A 		3
(-2.2)
A 		10
C 3.3
(0.8)
A 		2.5
(-2.3)
A 		3.9
(3)
A 		3.8
(2.6)
A 		2.3
(-3)
A 		3.4
(1.1)
A 		2
avr 4.6
(-0.5) 		3.2
(-2.6) 		7
(3) 		3.5
(-2.1) 		3.3
(-2.4) 		2.9
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.4
(3)
A 		1.2
(1.3)
A 		0.7
(-3)
A 		0.8
(-2.1)
A 		1
B 0.6
(-3)
A 		0.6
(-3)
A 		1.1
(3)
A 		0.6
(-3)
A 		1
C 0.7
(-3)
A 		3.1
(3)
A 		1.2
(-1.8)
A 		1.1
(-2)
A 		2
avr 0.9
(-2.3) 		1.6
(3) 		1
(-1.5) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-1.5)
A 		1.7
(2.5)
A 		1.2
(-0)
A 		0.6
(-3)
A 		1.8
(3)
A 		0.6
(-3)
A 		1
B 2.1
(0.8)
A 		0.8
(-2.7)
A 		2.9
(3)
A 		1.1
(-1.9)
A 		0.7
(-3)
A 		1.1
(-1.9)
A 		2
C 1.2
(3)
A 		0.8
(-1.8)
A 		1
(0.6)
A 		0.8
(-1.8)
A 		0.7
(-3)
A 		1.1
(1.8)
A 		1
avr 1.4
(1) 		1.1
(-1) 		1.7
(3) 		0.8
(-3) 		1.1
(-1) 		0.9
(-2.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13192
Sequence Type Exemplar sequence
Representative Public ID ZK228.2 NCBI
Target Description ZK228.2 /REP_DB=WormBase Gene ID /WP=CE16711 /TR=O46008 /GB=CAB04994.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029495 ENSEMBL cdna:SNAP chromosome:CEL140:V:18456476:18457582:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029508 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27790 hypothetical protein ZK228.2 - Caenorhabditis elegans 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 1.0E-144
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 3.6E-11
Sequence
Target Sequence 
>C. ELEGANS:193783_AT
gctcgtctcgaagaatcccttgaaatactgtggaagtactggtcactaggctatttgatc
aatctgagagctagctatcacaaaaatgtaaagtgttccactcttacaccaagagtagga
caggtagtgctggtgaacacaaatcttgtgcgacgacataaatggcctctaggtgtaatt
gtgcaagtgcacgagtcaaagagagaggacgaaattcgtacggcagttgttaggtgcaaa
gggaagttgtacaaaaggtctgtgtgccaactcattcctctcgaagtcgcgtcctcggat
gacgacagtttccctgaaaacactaaccagggagatgataaagagagagtgacggatgca
agaaagatcgttcaacatccgtcgactacctcactgccaaagcctgcagctgccctcttt
gatcctcgtaatgcacattactctcctgagctgtttcctcgatcgacactccctaacctt
gctgaaacgtctgagaataccgatgacctaaatacccaaaatttaaatatccccacaata
ccaaatccaaattcaattccgaagaagcgactggagggactcgagactatcggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGTCTCGAAGAATCCCTTGAAA 406 299 6457 Antisense
GGAAGTACTGGTCACTAGGCTATTT 347 529 6488 Antisense
GATCAATCTGAGAGCTAGCTATCAC 67 423 6513 Antisense
GTAAAGTGTTCCACTCTTACACCAA 412 461 6544 Antisense
GGCCTCTAGGTGTAATTGTGCAAGT 189 543 6620 Antisense
AAATTCGTACGGCAGTTGTTAGGTG 98 1 6668 Antisense
AGTCGCGTCCTCGGATGACGACAGT 477 57 6741 Antisense
CCTCGGATGACGACAGTTTCCCTGA 13 265 6749 Antisense
CAAGAAAGATCGTTCAACATCCGTC 572 183 6815 Antisense
TATCCCCACAATACCAAATCCAAAT 235 659 6984 Antisense
TGGAGGGACTCGAGACTATCGGCGA 224 549 7028 Antisense
Sequence Source Affymetrix Proprietary Database