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[193782_s_at] RNA recognition motif. (aka RRM, RBD, or RNP domain)

Description T11G6.8 /REP_DB=WormBase Gene ID /WP=CE06432 /TR=Q22412 /GB=CAA93419.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=RNA recognition motif. (aka RRM, RBD, or RNP domain)
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 87      6grp_total > 48      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 1382.6
(3)
P 		1101.8
(-1.6)
P 		1015.5
(-3)
P 		1248.3
(0.8)
P 		367
B 1442
(3)
P 		1035.1
(-2.4)
P 		990.6
(-3)
P 		1359.3
(1.9)
P 		451
C 1348.1
(3)
P 		1087.6
(-3)
P 		1089.1
(-3)
P 		1261.3
(1)
P 		261
avr 1390.9
(3) 		1074.8
(-2.3) 		1031.7
(-3) 		1289.6
(1.3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 987
1 2 3 4 5 6 range
A 1109.7
(0.7)
P 		939.6
(-2.5)
P 		1042.7
(-0.6)
P 		914.2
(-3)
P 		1147.9
(1.4)
P 		1230.3
(3)
P 		316
B 1843.5
(3)
P 		1229.5
(-1.3)
P 		1519.9
(0.7)
P 		989.8
(-3)
P 		1224.6
(-1.3)
P 		1451.7
(0.2)
P 		854
C 1193.3
(-0)
P 		1166.7
(-0.3)
P 		856.6
(-3)
P 		908.8
(-2.5)
P 		1095.7
(-0.9)
P 		1538.5
(3)
P 		682
avr 1382.2
(2.7) 		1111.9
(-0.8) 		1139.7
(-0.4) 		937.6
(-3) 		1156.1
(-0.2) 		1406.8
(3) 		469
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 503.4
(3)
P 		239.2
(-1.9)
P 		265.5
(-1.5)
P 		182.7
(-3)
P 		321
B 459.8
(3)
P 		255.6
(-2.3)
P 		229.6
(-3)
P 		289.7
(-1.4)
P 		230
C 446.3
(3)
P 		312.7
(-0.4)
P 		379.6
(1.3)
P 		212.7
(-3)
P 		234
avr 469.8
(3) 		269.2
(-2) 		291.6
(-1.4) 		228.4
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 204.6
(-3)
P 		334.2
(2.5)
P 		227.1
(-2)
P 		231.9
(-1.8)
P 		346.4
(3)
P 		299.5
(1)
P 		142
B 641.4
(3)
P 		409.3
(-0.7)
P 		369.1
(-1.3)
P 		262.2
(-3)
P 		497.6
(0.7)
P 		541.3
(1.4)
P 		379
C 442.3
(1.7)
P 		356
(0.1)
P 		218
(-2.4)
P 		182.8
(-3)
P 		354.5
(0.1)
P 		515
(3)
P 		332
avr 429.4
(2.4) 		366.5
(0.7) 		271.4
(-1.8) 		225.6
(-3) 		399.5
(1.6) 		451.9
(3) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193782_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10249
Sequence Type Exemplar sequence
Representative Public ID T11G6.8 NCBI
Target Description T11G6.8 /REP_DB=WormBase Gene ID /WP=CE06432 /TR=Q22412 /GB=CAA93419.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=RNA recognition motif. (aka RRM, RBD, or RNP domain)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069613 NCBI Caenorhabditis elegans T11G6.8 (T11G6.8) mRNA, complete cds. 11/11 A 
SNAP00000000769 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10861384:10864021:1 11/11 None
GENEFINDER00000000778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10861384:10864021:1 11/11 None
T11G6.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:10861369:10864138:1 gene:T11G6.8 11/11 None
T11G6.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:10861373:10864198:1 gene:T11G6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10861389-10865261(+) 96.86 100.0
Public Domain and Genome References
Gene Title RNA recognition motif. (aka RRM, RBD, or RNP domain)
Ensembl T11G6.8
Entrez Gene 177979 Entrez gene
SwissProt Q22412 EMBL-EBI
WormBase CE33830 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19213_AT zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein at
ATH1-121501:266240_AT zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein at
CANINE_2:CFA.18331.1.S1_S_AT similar to RNA binding motif protein 22 cfa
CANINE_2:CFAAFFX.27711.1.S1_AT similar to RNA binding motif protein 22 cfa
DROSOPHILA_2:1638840_AT dm
DROSGENOME1:141222_AT dm
CHICKEN:GGA.4751.1.S1_AT RNA binding motif protein 22 gga
CHICKEN:GGAAFFX.11671.1.S1_S_AT RNA binding motif protein 22 gga
CHICKEN:GGAAFFX.2815.1.S1_AT RNA binding motif protein 22 gga
CHICKEN:GGAAFFX.2815.1.S1_S_AT RNA binding motif protein 22 gga
HG-U133_PLUS_2:224068_X_AT RNA binding motif protein 22 hs
HG-U133B:224068_X_AT RNA binding motif protein 22 hs
HG-U133_PLUS_2:236872_AT RNA binding motif protein 22 hs
HG-U133B:236872_AT RNA binding motif protein 22 hs
HU35KSUBB:RC_W60486_AT RNA binding motif protein 22 hs
HU35KSUBC:RC_AA279646_AT RNA binding motif protein 22 hs
HG-U133A:218134_S_AT RNA binding motif protein 22 hs
HG-U133_PLUS_2:218134_S_AT RNA binding motif protein 22 hs
HG-U133A_2:218134_S_AT RNA binding motif protein 22 hs
U133_X3P:G8922327_3P_A_AT RNA binding motif protein 22 hs
U133_X3P:G4096747_3P_A_AT RNA binding motif protein 22 hs
U133_X3P:HS.25516.0.A1_3P_A_AT RNA binding motif protein 22 hs
U133_X3P:HS.202023.0.A1_3P_AT RNA binding motif protein 22 hs
HG-U133_PLUS_2:222527_S_AT RNA binding motif protein 22 hs
HG-U133B:222527_S_AT RNA binding motif protein 22 hs
HG-U95B:45730_AT RNA binding motif protein 22 hs
HG-U95D:69203_AT RNA binding motif protein 22 hs
HU35KSUBC:RC_D20052_AT RNA binding motif protein 22 hs
MU11KSUBA:AA450525_S_AT RNA binding motif protein 22 mm
MOE430A:1452675_AT RNA binding motif protein 22 mm
MOUSE430A_2:1452675_AT RNA binding motif protein 22 mm
MOUSE430_2:1452675_AT RNA binding motif protein 22 mm
MOUSE430_2:1444308_AT PREDICTED: Mus musculus RNA binding motif protein 22 (Rbm22), mRNA mm
MOE430B:1444308_AT PREDICTED: Mus musculus RNA binding motif protein 22 (Rbm22), mRNA mm
MG-U74AV2:162395_R_AT PREDICTED: Mus musculus RNA binding motif protein 22 (Rbm22), mRNA mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93419 Hypothetical protein T11G6.8 [Caenorhabditis elegans] ref|NP_502014.2| T11G6.8 [Caenorhabditis elegans] 0.0
blast CAE70835 Hypothetical protein CBG17615 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 6.2E-16
Sequence
Target Sequence 
>C. ELEGANS:193782_S_AT
ttcacaggatcaatgccacgtccaccagcgccaccaactttcgctgcgccaagaagtctt
gttgtaccaaatgtacggccagtgaaggctggagaatcaagcggtgcgtcatcatcatca
tcgatttattatccgagtcaagatccaacccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACAGGATCAATGCCACGTCCAC 457 685 1396 Antisense
AACTTTCGCTGCGCCAAGAAGTCTT 411 137 1431 Antisense
GCTGCGCCAAGAAGTCTTGTTGTAC 230 297 1438 Antisense
AGAAGTCTTGTTGTACCAAATGTAC 25 73 1447 Antisense
GTACCAAATGTACGGCCAGTGAAGG 293 457 1459 Antisense
ATGTACGGCCAGTGAAGGCTGGAGA 489 47 1466 Antisense
AGGCTGGAGAATCAAGCGGTGCGTC 502 51 1481 Antisense
GAGAATCAAGCGGTGCGTCATCATC 163 391 1487 Antisense
AATCAAGCGGTGCGTCATCATCATC 617 169 1490 Antisense
TCATCGATTTATTATCCGAGTCAAG 292 621 1513 Antisense
TTATCCGAGTCAAGATCCAACCCGT 619 677 1524 Antisense
Sequence Source Affymetrix Proprietary Database