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[193771_s_at] GDP-fucose transporter

Description C50F4.14 /REP_DB=WormBase Gene ID /WP=CE05478 /TR=Q18747 /GB=CAA94748.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=vanadate resistance protein transmembranous domains
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 65      6grp_total > 70      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 701
1 2 3 4 range
A 876.9
(-3)
P 		1408.8
(3)
P 		1194.6
(0.6)
P 		905.3
(-2.7)
P 		532
B 1045.8
(0.7)
P 		1251.7
(3)
P 		1101.3
(1.3)
P 		707.4
(-3)
P 		544
C 902.7
(-1.3)
P 		1287.8
(3)
P 		1272.9
(2.8)
P 		747.8
(-3)
P 		540
avr 941.8
(-1.2) 		1316.1
(3) 		1189.6
(1.6) 		786.8
(-3) 		529

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 656
1 2 3 4 5 6 range
A 1381.6
(3)
P 		1080.2
(-1.5)
P 		1204.4
(0.3)
P 		1257.4
(1.1)
P 		1223.3
(0.6)
P 		981.8
(-3)
P 		400
B 1043.7
(-3)
P 		1133.8
(-1.5)
P 		1101.6
(-2)
P 		1393.9
(3)
P 		1102.7
(-2)
P 		1107.2
(-1.9)
P 		350
C 918.8
(-3)
P 		1255.3
(0.1)
P 		1173.3
(-0.7)
P 		1575.1
(3)
P 		956.7
(-2.7)
P 		1008.9
(-2.2)
P 		656
avr 1114.7
(-1.7) 		1156.4
(-1) 		1159.8
(-1) 		1408.8
(3) 		1094.2
(-2) 		1032.6
(-3) 		376
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 319.3
(3)
P 		305.8
(2.6)
P 		312.3
(2.8)
P 		132.5
(-3)
P 		187
B 333.5
(3)
P 		309.1
(2.2)
P 		255.2
(0.4)
P 		150.8
(-3)
P 		183
C 298.8
(0.3)
P 		370.3
(1.6)
P 		443.6
(3)
P 		126.1
(-3)
P 		318
avr 317.2
(2.4) 		328.4
(2.7) 		337
(3) 		136.5
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 254.7
(-2.4)
P 		384.2
(3)
P 		262.3
(-2)
P 		318.9
(0.3)
P 		369.1
(2.4)
P 		239
(-3)
P 		145
B 363.2
(0.2)
P 		377.4
(0.7)
P 		267.5
(-3)
P 		369.2
(0.4)
P 		448
(3)
P 		412.9
(1.8)
P 		181
C 340.6
(-0)
P 		383
(3)
P 		298.6
(-3)
P 		316.7
(-1.7)
P 		309.6
(-2.2)
P 		337.7
(-0.2)
P 		84
avr 319.5
(-0.5) 		381.5
(3) 		276.1
(-3) 		334.9
(0.3) 		375.6
(2.7) 		329.9
(0.1) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193771_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11852
Sequence Type Exemplar sequence
Representative Public ID C50F4.14 NCBI
Target Description C50F4.14 /REP_DB=WormBase Gene ID /WP=CE05478 /TR=Q18747 /GB=CAA94748.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=vanadate resistance protein transmembranous domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073066 NCBI Caenorhabditis elegans C50F4.14 (C50F4.14) mRNA, complete cds. 11/11 None
SNAP00000009320 ENSEMBL cdna:SNAP chromosome:CEL140:V:9550352:9551609:-1 11/11 None
GENEFINDER00000009335 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9550352:9552683:-1 11/11 None
C50F4.14 ENSEMBL cdna:known chromosome:CEL140:V:9550216:9552420:-1 gene:C50F4.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9550351-9552683(-) 100.0 100.0
Public Domain and Genome References
Gene Title GDP-fucose transporter
Ensembl C50F4.14
Entrez Gene 179342 Entrez gene
SwissProt Q968A5 EMBL-EBI
WormBase CE30910 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582991_AT solute carrier family 35, member C1 cfa
CANINE_2:CFA.3456.1.S1_S_AT solute carrier family 35, member C1 cfa
CANINE_2:CFAAFFX.14795.1.S1_AT solute carrier family 35, member C1 cfa
CANINE:1582990_AT solute carrier family 35, member C1 cfa
CANINE_2:CFA.3456.1.A1_AT solute carrier family 35, member C1 cfa
DROSOPHILA_2:1628755_AT dm
DROSGENOME1:149481_AT dm
HG-U133B:222647_AT solute carrier family 35, member C1 hs
HG-U133_PLUS_2:222647_AT solute carrier family 35, member C1 hs
HG-U133_PLUS_2:218485_S_AT solute carrier family 35, member C1 hs
HG-U133A:218485_S_AT solute carrier family 35, member C1 hs
HG-U133A_2:218485_S_AT solute carrier family 35, member C1 hs
HU35KSUBA:RC_AA291429_AT solute carrier family 35, member C1 hs
U133_X3P:G8922992_3P_A_AT solute carrier family 35, member C1 hs
U133_X3P:G12655144_3P_AT solute carrier family 35, member C1 hs
HG-U95C:65152_AT solute carrier family 35, member C1 hs
HG-U95E:76022_R_AT solute carrier family 35, member C1 hs
MOE430A:1452139_AT solute carrier family 35, member C1 mm
MOUSE430_2:1452139_AT solute carrier family 35, member C1 mm
MOUSE430A_2:1452139_AT solute carrier family 35, member C1 mm
MG-U74BV2:111837_AT solute carrier family 35, member C1 mm
MG-U74BV2:115314_AT solute carrier family 35, member C1 mm
RG-U34B:RC_AI028997_AT solute carrier family 35, member C1 (predicted) rn
RAE230A:1367499_AT solute carrier family 35, member C1 (predicted) rn
RAE230B:1367499_AT solute carrier family 35, member C1 (predicted) rn
RAT230_2:1367499_AT solute carrier family 35, member C1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA94748 Hypothetical protein C50F4.14 [Caenorhabditis elegans] ref|NP_505467.2| C50F4.14 [Caenorhabditis elegans] gb|AAK50396.1| GDP-fucose transporter [Caenorhabditis elegans] sp|Q968A5|FUCT1_CAEEL GDP-fucose transporter 0.0
blast T20120 hypothetical protein C50F4.14 - Caenorhabditis elegans 0.0
blast CAE72199 Hypothetical protein CBG19307 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505467.2 8 30-47,62-79,126-148,152-171,180-202,222-244,251-273,307-326
C50F4.14 8 30-47,62-79,126-148,152-171,180-202,222-244,251-273,307-326
SNAP00000009320 8 33-51,71-93,98-120,124-143,152-174,194-216,223-245,267-289
GENEFINDER00000009335 10 65-87,114-136,143-163,183-205,210-232,236-255,262-284,309-331,338-360,394-413
Sequence
Target Sequence 
>C. ELEGANS:193771_S_AT
ggttgctgtgcccttattatttttggattcctgttaggagtcgatcaggaaggtgtgacc
ggaactctttcctacacgggtgtcatttttggagtactagcaagtctatcagttgctcta
aatgcaatttacacgcgaaaagttctctcatctgttggtgattgtctctggcgcctaaca
atgtacaacaatctgaatgctcttgttcttttcctcccacttatgcttttcaatggagaa
ttcggagcagtcttctatttcgataaactcttcgacacaaccttctggattcttatgact
ttgggtggcgttttcggatttatgatgggatacgtcactggatggcaaattcaagcaaca
tcgcctcttactcacaatatttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGCTGTGCCCTTATTATTTTTG 126 507 643 Antisense
GAAGGTGTGACCGGAACTCTTTCCT 33 335 691 Antisense
AACTCTTTCCTACACGGGTGTCATT 262 115 705 Antisense
GTCTCTGGCGCCTAACAATGTACAA 331 471 806 Antisense
ATCTGAATGCTCTTGTTCTTTTCCT 50 35 833 Antisense
TCCTCCCACTTATGCTTTTCAATGG 650 593 854 Antisense
GAATTCGGAGCAGTCTTCTATTTCG 483 323 880 Antisense
TCTTCGACACAACCTTCTGGATTCT 61 617 911 Antisense
ATGACTTTGGGTGGCGTTTTCGGAT 312 43 937 Antisense
AAATTCAAGCAACATCGCCTCTTAC 666 115 989 Antisense
TCGCCTCTTACTCACAATATTTCTG 620 597 1003 Antisense
Sequence Source Affymetrix Proprietary Database