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[193768_at]

Description C45E1.1 /REP_DB=WormBase Gene ID /WP=CE16926 /GEN=nhr-64 /TR=SW:O44960 /GB=AAC24283.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=hormone receptor-zinc finger protein
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 73      6grp_total > 47      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 36      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 973
1 2 3 4 range
A 799.7
(-1)
P 		617.7
(-2.5)
P 		558.4
(-3)
P 		1278.4
(3)
P 		720
B 752.6
(-1.6)
P 		530.5
(-3)
P 		616.6
(-2.5)
P 		1503.2
(3)
P 		973
C 780.7
(-1.3)
P 		578.6
(-3)
P 		586.9
(-2.9)
P 		1313.3
(3)
P 		735
avr 777.7
(-1.5) 		575.6
(-3) 		587.3
(-2.9) 		1365
(3) 		789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 631.6
(3)
P 		506
(-0.8)
P 		433.5
(-3)
P 		517.2
(-0.5)
P 		448.9
(-2.5)
P 		523.2
(-0.3)
P 		198
B 592.4
(3)
P 		499.2
(0.9)
P 		506.5
(1.1)
P 		477.6
(0.4)
P 		325.4
(-3)
P 		520.7
(1.4)
P 		267
C 399.7
(-3)
P 		445.9
(-1.8)
P 		524.8
(0.3)
P 		628.2
(3)
P 		400.6
(-3)
P 		594.2
(2.1)
P 		229
avr 541.2
(2.8) 		483.7
(0.6) 		488.3
(0.8) 		541
(2.8) 		391.6
(-3) 		546
(3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 291.2
(3)
P 		134.1
(-3)
P 		146
(-2.5)
P 		187.1
(-1)
P 		157
B 240
(0.5)
P 		131
(-3)
P 		142.9
(-2.6)
P 		320.3
(3)
P 		189
C 258.4
(3)
P 		166.4
(-3)
P 		204.6
(-0.5)
P 		221.5
(0.6)
P 		92
avr 263.2
(3) 		143.8
(-3) 		164.5
(-2) 		243
(2) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 116.4
(-1.5)
P 		180
(3)
P 		94.4
(-3)
P 		131.2
(-0.4)
P 		135.5
(-0.1)
P 		127.4
(-0.7)
P 		86
B 206.1
(3)
P 		166.2
(0.1)
P 		123
(-3)
P 		126.5
(-2.7)
P 		132.2
(-2.3)
P 		194.2
(2.1)
P 		83
C 148.1
(-1.2)
P 		136
(-2.2)
P 		133.6
(-2.4)
P 		126.3
(-3)
P 		129.6
(-2.7)
P 		198.9
(3)
P 		73
avr 156.9
(1.2) 		160.7
(1.6) 		117
(-3) 		128
(-1.8) 		132.4
(-1.4) 		173.5
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193768_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.182
Sequence Type Exemplar sequence
Representative Public ID C45E1.1 NCBI
Target Description C45E1.1 /REP_DB=WormBase Gene ID /WP=CE16926 /GEN=nhr-64 /TR=SW:O44960 /GB=AAC24283.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=hormone receptor-zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025872(11), NM_001025871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025872 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-64) (nhr-64) mRNA, complete cds. 11/11 None
NM_001025871 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-64) (nhr-64) mRNA, complete cds. 11/11 None
GENEFINDER00000025549 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3104369:3109523:1 11/11 None
C45E1.1b ENSEMBL cdna:known chromosome:CEL140:I:3104240:3109608:1 gene:C45E1.1 11/11 None
C45E1.1a ENSEMBL cdna:known chromosome:CEL140:I:3104240:3109523:1 gene:C45E1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025546 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3104239-3109523(+) 98.14 100.0
Public Domain and Genome References
Ensembl C45E1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT27251 Nuclear hormone receptor family protein 64, isoform b [Caenorhabditis elegans] ref|NP_001021043.1| Nuclear Hormone Receptor family member (nhr-64) [Caenorhabditis elegans] 0.0
blast AAC24283 Nuclear hormone receptor family protein 64, isoform a [Caenorhabditis elegans] ref|NP_001021042.1| Nuclear Hormone Receptor family member (nhr-64) [Caenorhabditis elegans] sp|O44960|NHR64_CAEEL Nuclear hormone receptor family member nhr-64 0.0
blast AAO39178 nuclear receptor NHR-64 [Caenorhabditis elegans] 0.0
blast AAO39177 nuclear receptor NHR-64 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.5E-48
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.9E-14
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.1E-7
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.5E-48
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.9E-41
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.5E-48
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.9E-41
Sequence
Target Sequence 
>C. ELEGANS:193768_AT
atatcacacaggttgccttgctcaggcacttctcagcacaacatcttgtcatgtgtgcag
cattccgaagcattcacttatcagatgcagtttggctgacaaatgagacatgcctgcaca
aggatagtccaaagatcccggatatgaaccgagtcgctgaacgaataatcgatcaagtga
cgaatccaatgagatcgttacatatgaacgaaatcgagtatatcgctctgaaagctatcg
ccttttttgatccattggcaaaaggaatcacaagcgagtcgtacagtgatgtagaggaaa
tgcgacaacggattctcgaatccttcgaacgacatgtccgatacgtgtccccttacaaag
acatgcccctccgatttgcaaaccttctcctactccttcctccaatgcttgcgatttccc
gtgatttggtagaagacgttcaactggcaaaactgttcggacttgcttcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCACACAGGTTGCCTTGCTCAG 708 19 692 Antisense
CACTTCTCAGCACAACATCTTGTCA 447 197 718 Antisense
CATCTTGTCATGTGTGCAGCATTCC 268 213 733 Antisense
GCAGCATTCCGAAGCATTCACTTAT 130 311 748 Antisense
GACATGCCTGCACAAGGATAGTCCA 428 369 798 Antisense
GATCCCGGATATGAACCGAGTCGCT 203 417 825 Antisense
AAGCTATCGCCTTTTTTGATCCATT 383 151 923 Antisense
GAATCCTTCGAACGACATGTCCGAT 137 329 1009 Antisense
GTGTCCCCTTACAAAGACATGCCCC 590 485 1036 Antisense
GCTTGCGATTTCCCGTGATTTGGTA 450 303 1098 Antisense
AAAACTGTTCGGACTTGCTTCAATT 480 131 1140 Antisense
Sequence Source Affymetrix Proprietary Database