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[193765_at]

Description Y57G11C.24C /REP_DB=WormBase Gene ID /WP=CE14976 /TR=O18249 /GB=CAB16526.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=epidermal growth factor receptor kinase substrate
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 31      6grp_total > 02      4grp_total > 52      6grp_highest_sub > 02      6grp_cgc > 43      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1416
1 2 3 4 range
A 1732.7
(1.7)
P 		1993.3
(3)
P 		1665.8
(1.4)
P 		788.6
(-3)
P 		1205
B 1752.3
(3)
P 		1602.1
(2)
P 		1503.7
(1.4)
P 		822.1
(-3)
P 		930
C 1536.3
(3)
P 		1412.9
(2.2)
P 		1427.9
(2.3)
P 		577.3
(-3)
P 		959
avr 1673.8
(3) 		1669.4
(3) 		1532.5
(2.1) 		729.3
(-3) 		945

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1011
1 2 3 4 5 6 range
A 1162
(0.8)
P 		1536.9
(3)
P 		525.5
(-3)
P 		872.2
(-0.9)
P 		751.1
(-1.7)
P 		755.2
(-1.6)
P 		1011
B 1129.5
(1)
P 		1388.8
(3)
P 		931
(-0.5)
P 		736.5
(-1.9)
P 		740.3
(-1.9)
P 		597
(-3)
P 		792
C 1329.8
(3)
P 		1215
(2)
P 		1330.6
(3)
P 		749.7
(-2.1)
P 		926.9
(-0.5)
P 		643.2
(-3)
P 		687
avr 1207.1
(1.5) 		1380.2
(3) 		929
(-0.8) 		786.1
(-2) 		806.1
(-1.8) 		665.1
(-3) 		715
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 630.9
(3)
P 		432.7
(0.7)
P 		435.5
(0.7)
P 		115.4
(-3)
P 		516
B 558.8
(3)
P 		395.7
(0.4)
P 		348.4
(-0.3)
P 		175.2
(-3)
P 		384
C 508.6
(3)
P 		406.2
(1.5)
P 		497.7
(2.8)
P 		97.3
(-3)
P 		411
avr 566.1
(3) 		411.5
(0.9) 		427.2
(1.1) 		129.3
(-3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 214.2
(-1.6)
P 		546.6
(3)
P 		114.4
(-3)
P 		221.2
(-1.5)
P 		226.7
(-1.4)
P 		183.9
(-2)
P 		432
B 393
(1.4)
P 		462.3
(3)
P 		226.1
(-2.3)
P 		195.1
(-3)
P 		300.8
(-0.6)
P 		222.6
(-2.4)
P 		267
C 492.9
(3)
P 		370.7
(0.9)
P 		338.7
(0.3)
P 		150.8
(-3)
P 		299.9
(-0.4)
P 		215.3
(-1.9)
P 		342
avr 366.7
(0.9) 		459.9
(3) 		226.4
(-2.2) 		189
(-3) 		275.8
(-1.1) 		207.3
(-2.6) 		271
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9726
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.24C NCBI
Target Description Y57G11C.24C /REP_DB=WormBase Gene ID /WP=CE14976 /TR=O18249 /GB=CAB16526.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=epidermal growth factor receptor kinase substrate
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070401(11), NM_001028350(11), NM_001028351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070401 NCBI Caenorhabditis elegans EPS (human endocytosis) related family member (eps-8) (eps-8) mRNA, complete cds. 11/11 A 
NM_001028350 NCBI Caenorhabditis elegans EPS (human endocytosis) related family member (eps-8) (eps-8) mRNA, complete cds. 11/11 None
NM_001028351 NCBI Caenorhabditis elegans EPS (human endocytosis) related family member (eps-8) (eps-8) mRNA, complete cds. 11/11 None
SNAP00000003504 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14895866:14900355:1 11/11 None
GENEFINDER00000003563 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14883393:14900355:1 11/11 None
Y57G11C.24c ENSEMBL cdna:known chromosome:CEL140:IV:14879528:14900613:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.3 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.10 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.6 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.9 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.4 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.7 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.2 ENSEMBL cdna:known chromosome:CEL140:IV:14879541:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.8 ENSEMBL cdna:known chromosome:CEL140:IV:14885532:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.11 ENSEMBL cdna:known chromosome:CEL140:IV:14885535:14900355:1 gene:Y57G11C.24 11/11 None
Y57G11C.24d.5 ENSEMBL cdna:known chromosome:CEL140:IV:14885540:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.1 ENSEMBL cdna:known chromosome:CEL140:IV:14886576:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24e.1 ENSEMBL cdna:known chromosome:CEL140:IV:14891425:14900355:1 gene:Y57G11C.24 11/11 None
Y57G11C.24e.2 ENSEMBL cdna:known chromosome:CEL140:IV:14891426:14900355:1 gene:Y57G11C.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178411 5 3 NM_001028350 193765_at (11), 193808_s_at (11)
NM_001028351 193765_at (11), 193808_s_at (11)
NM_070401 193765_at (11), 193808_s_at (11)
NM_070402 193808_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14879533-14900361(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G11C.24
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16526 Hypothetical protein Y57G11C.24c [Caenorhabditis elegans] ref|NP_502802.2| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
blast CAE45095 Hypothetical protein Y57G11C.24d [Caenorhabditis elegans] ref|NP_001023521.1| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
blast CAB16527 Hypothetical protein Y57G11C.24a [Caenorhabditis elegans] ref|NP_502803.2| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
blast CAE45094 Hypothetical protein Y57G11C.24e [Caenorhabditis elegans] ref|NP_001023522.1| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 4.1E-6
Pfam IPR001452 EMBL-EBI SH3 4.1E-6
Pfam IPR001452 EMBL-EBI SH3 4.1E-6
Pfam IPR001452 EMBL-EBI SH3 4.1E-6
Sequence
Target Sequence 
>C. ELEGANS:193765_AT
caggcgcaaaacgtctatcgtccacccccaccaccactagtatccgatgcaggtgtccag
gtcgaaatccgccgggaacatgttgctccgccaccacctccagttgtaattccaccacca
ccaccgccaagaaaaccaccagttgaagaaccagtctaccaaccgcaacccgctcaacgt
gccggattggaaatctggagacggaatcagaatcctcaattgattcaagaagtgactgaa
actgtgggacaacacagtggagacattttaagaccagcaatgcaaagggccactcgagtg
gcaatcaacgaaaagtcttctccggaagacgtgactcgttggttacaggagaagggattc
tcaccaagagtaattgacctattggatggtcaagatggtgccaatctattctccttgtca
aaattgcatctgcaacaagcttgtggaagagatgagggtggatatttgtacagtcaattg
ttggttcagaagaaaagaagtggattccgaactcacactggcgatgaattgaaagcaatt
ctcaatcacagacgaacccacgtggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGCGCAAAACGTCTATCGTCCAC 198 209 2179 Antisense
ACCACCACTAGTATCCGATGCAGGT 386 85 2208 Antisense
TGCAGGTGTCCAGGTCGAAATCCGC 256 573 2226 Antisense
AAATCCGCCGGGAACATGTTGCTCC 143 119 2243 Antisense
TTGAAGAACCAGTCTACCAACCGCA 413 699 2321 Antisense
CCGCTCAACGTGCCGGATTGGAAAT 330 261 2348 Antisense
GACCAGCAATGCAAAGGGCCACTCG 165 383 2450 Antisense
TTCTCCGGAAGACGTGACTCGTTGG 424 693 2496 Antisense
AGATGGTGCCAATCTATTCTCCTTG 51 67 2571 Antisense
ATTCCGAACTCACACTGGCGATGAA 652 5 2682 Antisense
AATCACAGACGAACCCACGTGGAAT 428 171 2722 Antisense
Sequence Source Affymetrix Proprietary Database