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[193764_at] Lectin C-type domain short and long forms (2 domains)

Description F49A5.7 /REP_DB=WormBase Gene ID /WP=CE16070 /TR=O45534 /GB=CAB04419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_total > 01      4grp_total > 51      6grp_cgc > 53      6grp_cgc_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 38.2
(0.1)
P 		70.8
(3)
P 		44.6
(0.7)
A 		3.9
(-3)
A 		67
B 42.7
(2.1)
P 		50.3
(3)
P 		33.1
(0.9)
A 		2
(-3)
A 		48
C 62.3
(0.1)
P 		84.5
(3)
P 		57.2
(-0.6)
P 		38.7
(-3)
A 		46
avr 47.7
(0.7) 		68.5
(3) 		45
(0.4) 		14.9
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 3.4
(-3)
A 		47.3
(3)
P 		37.3
(1.6)
M 		37.4
(1.6)
P 		29.8
(0.6)
A 		27.4
(0.3)
A 		44
B 34.7
(1.3)
A 		45.3
(3)
P 		18.9
(-1.2)
A 		7.8
(-3)
A 		29.1
(0.4)
A 		17.1
(-1.5)
A 		38
C 33
(0.9)
A 		48.2
(3)
P 		5.3
(-3)
A 		29
(0.3)
A 		32.1
(0.7)
A 		18
(-1.2)
A 		43
avr 23.7
(-2.3) 		46.9
(3) 		20.5
(-3) 		24.7
(-2) 		30.3
(-0.8) 		20.8
(-2.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 13.9
(2.4)
P 		15.4
(3)
P 		11.7
(1.5)
A 		0.6
(-3)
A 		15
B 13.6
(3)
P 		12.4
(2.5)
P 		7.7
(0.3)
A 		0.4
(-3)
A 		13
C 20.6
(1.8)
P 		24.3
(3)
P 		19.9
(1.5)
P 		6.5
(-3)
A 		18
avr 16
(2.4) 		17.4
(3) 		13.1
(1.3) 		2.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.6
(-3)
A 		16.8
(3)
P 		8.1
(-0.2)
M 		9.5
(0.3)
P 		9
(0.1)
A 		6.7
(-0.7)
A 		16
B 12.1
(1.6)
A 		15.1
(3)
P 		4.6
(-1.8)
A 		2.1
(-3)
A 		11.8
(1.5)
A 		6.4
(-1)
A 		13
C 12.2
(1.9)
A 		14.7
(3)
P 		1.4
(-3)
A 		5.8
(-1)
A 		10.4
(1.1)
A 		6
(-0.9)
A 		13
avr 8.3
(-1) 		15.5
(3) 		4.7
(-3) 		5.8
(-2.4) 		10.4
(0.2) 		6.4
(-2.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13447
Sequence Type Exemplar sequence
Representative Public ID F49A5.7 NCBI
Target Description F49A5.7 /REP_DB=WormBase Gene ID /WP=CE16070 /TR=O45534 /GB=CAB04419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074861 NCBI Caenorhabditis elegans C-type LECtin family member (clec-33) (clec-33) mRNA, complete cds. 11/11 None
SNAP00000001317 ENSEMBL cdna:SNAP chromosome:CEL140:V:16870259:16871234:-1 11/11 None
GENEFINDER00000001324 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16870259:16874068:-1 11/11 None
F49A5.7 ENSEMBL cdna:known chromosome:CEL140:V:16870259:16872934:-1 gene:F49A5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001315 2/11 Cross Hyb Matching Probes None
GENEFINDER00000001323 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16870258-16873009(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-33
Ensembl F49A5.7
Entrez Gene 186007 Entrez gene
SwissProt O45534 EMBL-EBI
WormBase CE38604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04419 Hypothetical protein F49A5.7 [Caenorhabditis elegans] ref|NP_507262.2| C-type LECtin family member (clec-33) [Caenorhabditis elegans] 0.0
blast T22397 hypothetical protein F49A5.7 - Caenorhabditis elegans 0.0
blast T22397 hypothetical protein F49A5.7 - Caenorhabditis elegans 1.0E-171
blast T22397 hypothetical protein F49A5.7 - Caenorhabditis elegans 1.0E-163
blast CAB04419 Hypothetical protein F49A5.7 [Caenorhabditis elegans] ref|NP_507262.2| C-type LECtin family member (clec-33) [Caenorhabditis elegans] 1.0E-157
blast CAB04419 Hypothetical protein F49A5.7 [Caenorhabditis elegans] ref|NP_507262.2| C-type LECtin family member (clec-33) [Caenorhabditis elegans] 1.0E-151
blast T22397 hypothetical protein F49A5.7 - Caenorhabditis elegans 1.0E-138
blast CAB04418 Hypothetical protein F49A5.6 [Caenorhabditis elegans] ref|NP_507263.1| THaumatiN family member (thn-4) [Caenorhabditis elegans] 1.0E-123
blast CAE17834 Hypothetical protein F49A5.9 [Caenorhabditis elegans] ref|NP_001023952.1| C-type LECtin family member (clec-32) [Caenorhabditis elegans] 3.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.7E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-5
Pfam IPR001304 EMBL-EBI C-type lectin 3.4E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-5
Pfam IPR001304 EMBL-EBI C-type lectin 3.4E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-5
Pfam IPR001304 EMBL-EBI C-type lectin 3.4E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-5
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 3.0E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507262.2 2 20-42,334-356
F49A5.7 3 52-74,103-125,375-397
GENEFINDER00000001324 2 229-251,277-299
Sequence
Target Sequence 
>C. ELEGANS:193764_AT
gttgcctacatttggaccgggttgatttgtaatgcaaatacttcttcttcgtgtacttgg
gatctgaagagtgggtccgcggcaaactatgacaacttcgcaaaaggctttcccaacaag
accattggggactgcgtttacttcatcgcaaatggaacagaagctggacactggaaaagt
agcgcatgcaatcagacaatgagttatgtgtgtgaactacctccaactattcatgatgat
aattgcgataacaattataacaataattgttacgtacgctacgataagtcgtccaccatt
gctgatgctcaggagttttgcaaaacaaagcacggcggcaaccttgtttcaatcaattcg
gccaatgaaaatcgttatgttcaaactttatactacgtgagtggatatattccactgggt
gcagtggttccaaactacaacgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCCTACATTTGGACCGGGTTGA 547 439 796 Antisense
TGCAAATACTTCTTCTTCGTGTACT 419 577 828 Antisense
GGATCTGAAGAGTGGGTCCGCGGCA 394 511 855 Antisense
TCCGCGGCAAACTATGACAACTTCG 677 595 871 Antisense
GACAACTTCGCAAAAGGCTTTCCCA 618 363 886 Antisense
AAAGGCTTTCCCAACAAGACCATTG 316 121 898 Antisense
AGACCATTGGGGACTGCGTTTACTT 686 69 914 Antisense
GTACGCTACGATAAGTCGTCCACCA 368 459 1069 Antisense
GTCCACCATTGCTGATGCTCAGGAG 441 477 1086 Antisense
AAAACAAAGCACGGCGGCAACCTTG 707 127 1117 Antisense
GCAGTGGTTCCAAACTACAACGTCA 485 309 1216 Antisense
Sequence Source Affymetrix Proprietary Database