[Home] | [Total List]

[193763_at] Lectin C-type domain short and long forms (2 domains)

Description F49A5.2 /REP_DB=WormBase Gene ID /WP=CE16065 /TR=O45528 /GB=CAB04414.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 4grp_high_8_8 > 39      6grp_total > 30      4grp_total > 57      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 56
(-0.2)
P 		98.5
(3)
P 		94.8
(2.7)
A 		19.1
(-3)
A 		79
B 66.7
(-3)
M 		117.8
(1.6)
M 		133.6
(3)
P 		81
(-1.7)
P 		67
C 97.8
(-3)
A 		101.2
(-0.2)
A 		103.6
(1.8)
P 		105
(3)
P 		7
avr 73.5
(-2.3) 		105.8
(2.3) 		110.7
(3) 		68.4
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 97.4
(1.6)
A 		96.1
(1.4)
M 		107.5
(3)
A 		87.5
(0.2)
P 		65.3
(-2.9)
P 		64.8
(-3)
A 		43
B 70.2
(-0.5)
A 		113.3
(3)
P 		76.3
(0)
P 		109.5
(2.7)
P 		78.2
(0.2)
M 		38.5
(-3)
A 		75
C 38.6
(-3)
A 		90.9
(1.3)
P 		76.4
(0.1)
A 		110.9
(3)
A 		68.6
(-0.5)
P 		44.2
(-2.5)
A 		72
avr 68.7
(-0.8) 		100.1
(2.7) 		86.7
(1.2) 		102.6
(3) 		70.7
(-0.6) 		49.2
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 20.4
(1.8)
P 		21.4
(2.1)
P 		24.8
(3)
A 		2.8
(-3)
A 		22
B 21.3
(-1.2)
M 		29.1
(2.2)
M 		31
(3)
P 		17.3
(-3)
P 		14
C 32.4
(1.8)
A 		29.1
(0.7)
A 		36.1
(3)
P 		17.7
(-3)
P 		18
avr 24.7
(1) 		26.5
(1.6) 		30.6
(3) 		12.6
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 17.9
(-2.3)
A 		34.2
(3)
M 		23.4
(-0.5)
A 		22.2
(-0.9)
P 		19.7
(-1.7)
P 		15.8
(-3)
A 		18
B 24.4
(-0.4)
A 		37.7
(3)
P 		18.5
(-1.9)
P 		29
(0.8)
P 		31.8
(1.5)
M 		14.3
(-3)
A 		23
C 14.3
(-3)
A 		27.8
(3)
P 		19.5
(-0.7)
A 		22.3
(0.6)
A 		22.2
(0.5)
P 		14.8
(-2.8)
A 		14
avr 18.9
(-1.7) 		33.2
(3) 		20.5
(-1.2) 		24.5
(0.1) 		24.6
(0.2) 		15
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13017
Sequence Type Exemplar sequence
Representative Public ID F49A5.2 NCBI
Target Description F49A5.2 /REP_DB=WormBase Gene ID /WP=CE16065 /TR=O45528 /GB=CAB04414.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074857 NCBI Caenorhabditis elegans C-type LECtin family member (clec-31) (clec-31) mRNA, complete cds. 11/11 None
SNAP00000001311 ENSEMBL cdna:SNAP chromosome:CEL140:V:16859039:16860536:-1 10/11 None
GENEFINDER00000001326 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16859039:16860536:-1 10/11 None
F49A5.2 ENSEMBL cdna:known chromosome:CEL140:V:16858857:16860536:-1 gene:F49A5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028979 1/11 Cross Hyb Matching Probes None
NM_001028781 1/11 Cross Hyb Matching Probes None
SNAP00000001313 1/11 Cross Hyb Matching Probes None
SNAP00000028354 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028356 1/11 Cross Hyb Matching Probes None
F49A5.9 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16858856-16860536(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-31
Ensembl F49A5.2
Entrez Gene 186002 Entrez gene
SwissProt O45528 EMBL-EBI
WormBase CE16065 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04414 Hypothetical protein F49A5.2 [Caenorhabditis elegans] ref|NP_507258.1| C-type LECtin family member (clec-31) [Caenorhabditis elegans] 0.0
blast CAE17834 Hypothetical protein F49A5.9 [Caenorhabditis elegans] ref|NP_001023952.1| C-type LECtin family member (clec-32) [Caenorhabditis elegans] 1.0E-108
blast CAB04826 Hypothetical protein T25E12.8 [Caenorhabditis elegans] ref|NP_507234.1| C-type LECtin family member (clec-34) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.2E-14
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507258.1 1 49-71
F49A5.2 1 49-71
SNAP00000001311 1 49-71
GENEFINDER00000001326 1 49-71
Sequence
Target Sequence 
>C. ELEGANS:193763_AT
gggatctggaaagtcggtctacggatactaatcttgtctatactaattttgcaagcggac
tttctagcaatgaatgcgtttatttcatcactgctggatcagaagctggaaaatggaaaa
gtgactcatgtaatcagacaatgagtttcatatgtgaactaccttcaacaatacatgatg
ataattgtgataacatttacaacaaccattgctacctacgctacgatttgtcttacactg
ttgctgaagctcaaacgttctgcaaaacaaagtgcgccaacctagtttcaatcaattcgg
ccaacgaaaatcgttatgtacaaagtatttacaatgacacaaacggatatattcaacttg
gtgcaatgcttctttcatccgacgacatatattggctggacggatcactaccggtctata
ataatattaaacgaactttgaatggaaattgtctgttcatgagtgtttcaaaacaccgtc
gtggtttttggtacactgtcgaatgcacccaaagatcatggtttctgtgtaaacggccgg
caggaattaccaactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATCTGGAAAGTCGGTCTACGGA 106 497 563 Antisense
GAATGCGTTTATTTCATCACTGCTG 379 331 634 Antisense
TACAACAACCATTGCTACCTACGCT 227 643 760 Antisense
CCTACGCTACGATTTGTCTTACACT 342 269 777 Antisense
GTTGCTGAAGCTCAAACGTTCTGCA 674 437 802 Antisense
CTTGGTGCAATGCTTCTTTCATCCG 321 217 919 Antisense
TGCTTCTTTCATCCGACGACATATA 338 579 929 Antisense
CTGGACGGATCACTACCGGTCTATA 127 241 958 Antisense
CACCGTCGTGGTTTTTGGTACACTG 155 167 1036 Antisense
GTACACTGTCGAATGCACCCAAAGA 413 459 1053 Antisense
ACGGCCGGCAGGAATTACCAACTGT 604 87 1095 Antisense
Sequence Source Affymetrix Proprietary Database