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[193761_at] palmitoyl-protein thioesterase precursor

Description F44C4.5 /REP_DB=WormBase Gene ID /WP=CE07253 /GEN=ppt-1 /TR=Q20390 /GB=AAA92329.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=palmitoyl-protein thioesterase precursor
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      6grp_highest_nonorm > 72      6grp_total > 73      4grp_total > 02      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1085
1 2 3 4 range
A 103.1
(-2.9)
P 		80.8
(-3)
A 		130.9
(-2.7)
A 		1053.2
(3)
P 		972
B 138.3
(-3)
P 		158.4
(-2.9)
A 		146.7
(-2.9)
A 		1064
(3)
P 		926
C 147.8
(-2.8)
P 		170.3
(-2.7)
A 		116.6
(-3)
A 		1165.4
(3)
P 		1049
avr 129.7
(-3) 		136.5
(-3) 		131.4
(-3) 		1094.2
(3) 		965

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 693
1 2 3 4 5 6 range
A 125.4
(-3)
P 		188.6
(-2.5)
P 		682
(1.8)
P 		818.1
(3)
P 		306.2
(-1.4)
P 		333.2
(-1.2)
P 		693
B 219.5
(-3)
P 		267.2
(-1.9)
P 		446.2
(2.2)
P 		479.1
(3)
P 		480.2
(3)
P 		315.1
(-0.8)
P 		261
C 212.1
(-3)
P 		294.4
(-2)
P 		482.2
(0.4)
P 		690.8
(3)
P 		411
(-0.5)
P 		362.1
(-1.1)
P 		479
avr 185.7
(-3) 		250.1
(-2.2) 		536.8
(1.4) 		662.7
(3) 		399.1
(-0.3) 		336.8
(-1.1) 		477
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 37.5
(-2.1)
P 		17.5
(-3)
A 		34.2
(-2.3)
A 		154.2
(3)
P 		137
B 44.1
(-2.7)
P 		39.1
(-2.8)
A 		34
(-3)
A 		226.7
(3)
P 		193
C 48.9
(-2.7)
P 		49
(-2.7)
A 		40.6
(-3)
A 		196.5
(3)
P 		156
avr 43.5
(-2.7) 		35.2
(-3) 		36.3
(-3) 		192.5
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 23.1
(-3)
P 		67.1
(-1.6)
P 		148.5
(1.1)
P 		207.5
(3)
P 		92.4
(-0.7)
P 		81.1
(-1.1)
P 		184
B 76.4
(-3)
P 		88.9
(-2.4)
P 		108.3
(-1.4)
P 		126.9
(-0.4)
P 		195.1
(3)
P 		117.5
(-0.9)
P 		119
C 78.6
(-3)
P 		89.8
(-1.9)
P 		122.7
(1.4)
P 		138.9
(3)
P 		133
(2.4)
P 		121.2
(1.2)
P 		60
avr 59.4
(-3) 		81.9
(-1.6) 		126.5
(1.1) 		157.8
(3) 		140.2
(1.9) 		106.6
(-0.1) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11583
Sequence Type Exemplar sequence
Representative Public ID F44C4.5 NCBI
Target Description F44C4.5 /REP_DB=WormBase Gene ID /WP=CE07253 /GEN=ppt-1 /TR=Q20390 /GB=AAA92329.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=palmitoyl-protein thioesterase precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072283 NCBI Caenorhabditis elegans Palmitoyl Protein Thioesterase family member (ppt-1) (ppt-1) mRNA, complete cds. 11/11 None
SNAP00000007887 ENSEMBL cdna:SNAP chromosome:CEL140:V:6627371:6628899:-1 11/11 None
GENEFINDER00000007892 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6627371:6629635:-1 11/11 None
F44C4.5 ENSEMBL cdna:known chromosome:CEL140:V:6627371:6628829:-1 gene:F44C4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6627370-6628815(-) 100.0 100.0
Public Domain and Genome References
Gene Title palmitoyl-protein thioesterase precursor
Gene Symbol ppt-1
Ensembl F44C4.5
Entrez Gene 191744 Entrez gene
SwissProt Q20390 EMBL-EBI
WormBase CE07253 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251408_AT palmitoyl protein thioesterase family protein at
CANINE:1596415_S_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) cfa
CANINE:1588862_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) cfa
CANINE:1585802_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) cfa
CANINE_2:CFA.10158.1.S1_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) cfa
CANINE_2:CFAAFFX.5450.1.S1_S_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) cfa
DROSOPHILA_2:1637608_AT Palmitoyl-protein thioesterase 1 dm
DROSGENOME1:144710_AT Palmitoyl-protein thioesterase 1 dm
CHICKEN:GGA.4593.1.S1_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) gga
CHICKEN:GGAAFFX.12454.1.S1_S_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) gga
CHICKEN:GGAAFFX.21377.1.S1_S_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) gga
CHICKEN:GGA.4593.3.A1_A_AT Similar to Palmitoyl-protein thioesterase 1 precursor (Palmitoyl-protein hydrolase 1) gga
HG-U133_PLUS_2:200975_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) hs
HG-U133A:200975_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) hs
HG-FOCUS:200975_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) hs
HG-U133A_2:200975_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) hs
HUGENEFL:U44772_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) hs
U133_X3P:G4506030_3P_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) hs
HG-U95AV2:34774_AT palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) hs
MOE430A:1422468_AT palmitoyl-protein thioesterase 1 mm
MOUSE430_2:1422468_AT palmitoyl-protein thioesterase 1 mm
MOUSE430A_2:1422468_AT palmitoyl-protein thioesterase 1 mm
MG-U74AV2:99646_AT palmitoyl-protein thioesterase 1 mm
MOE430B:1420015_S_AT palmitoyl-protein thioesterase 1 mm
MOUSE430_2:1420015_S_AT palmitoyl-protein thioesterase 1 mm
MOE430B:1420016_AT Palmitoyl-protein thioesterase 1 (Ppt1), mRNA mm
MOUSE430_2:1420016_AT Palmitoyl-protein thioesterase 1 (Ppt1), mRNA mm
MU19KSUBB:TC31160_AT Palmitoyl-protein thioesterase 1 (Ppt1), mRNA mm
RG-U34A:L34262_AT palmitoyl-protein thioesterase rn
RAE230A:1370236_AT palmitoyl-protein thioesterase rn
RAT230_2:1370236_AT palmitoyl-protein thioesterase rn
RAE230B:1392112_AT Palmitoyl-protein thioesterase rn
RAT230_2:1392112_AT Palmitoyl-protein thioesterase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5764 lysosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8474 palmitoyl-(protein) hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA92329 Palmitoyl protein thioesterase protein 1 [Caenorhabditis elegans] ref|NP_504684.1| Palmitoyl Protein Thioesterase family member (ppt-1) [Caenorhabditis elegans] 1.0E-153
blast CAE71918 Hypothetical protein CBG18981 [Caenorhabditis briggsae] 1.0E-145
blast AAU01161 palmitoyl protein thioesterase [Caenorhabditis elegans] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR002472 EMBL-EBI Palmitoyl protein thioesterase 1.2E-115
Pfam IPR002472 EMBL-EBI Palmitoyl protein thioesterase 1.1E-118
Pfam IPR002472 EMBL-EBI Palmitoyl protein thioesterase 1.1E-118
Sequence
Target Sequence 
>C. ELEGANS:193761_AT
atgcgatcggattctcacaaggagcacagtttttgagagcggttgcccaaagatgcccaa
atccaccaatgaagaatttggtgtcagtcggtggtcaacatcaaggagtttttggagccc
cgtactgcattggtgacaatattatgtgcaatggcgtgagacgtctcattgacttgggag
cttatcttccatttgtacaaaaacgagttgttcaagcccagtactggcacgacccaaatc
aagtcgaagagtataaaaaacgttctattttcttggctgatatcaataacgaaaacaata
acaacccgacttacaaacgcaacttattgagtctcaaaaacctggttctggtgaaattca
atcaagatcatatggttgtaccaaaggattcatcttggttcgggttctacaaagacggtg
atattgacacaattctcccaatgaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGATCGGATTCTCACAAGGAGC 131 43 233 Antisense
CACAGTTTTTGAGAGCGGTTGCCCA 610 195 257 Antisense
CAAAGATGCCCAAATCCACCAATGA 382 191 280 Antisense
GGTGTCAGTCGGTGGTCAACATCAA 35 499 312 Antisense
GAGACGTCTCATTGACTTGGGAGCT 327 393 390 Antisense
TGGGAGCTTATCTTCCATTTGTACA 256 553 407 Antisense
ACGAGTTGTTCAAGCCCAGTACTGG 543 93 435 Antisense
GTACTGGCACGACCCAAATCAAGTC 496 457 453 Antisense
CGTTCTATTTTCTTGGCTGATATCA 357 247 493 Antisense
AAGGATTCATCTTGGTTCGGGTTCT 532 159 616 Antisense
TTGACACAATTCTCCCAATGAACGA 488 701 656 Antisense
Sequence Source Affymetrix Proprietary Database