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[193757_at]

Description T19C9.7 /REP_DB=WormBase Gene ID /WP=CE16424 /TR=O45796 /GB=CAB07490.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase)
Cluster 6grp_total > 36      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 10.3
(-2.9)
A 		55.7
(-0.2)
A 		9.4
(-3)
A 		109
(3)
P 		100
B 11.1
(-1.9)
A 		13.1
(-1.3)
A 		7.2
(-3)
A 		27.8
(3)
A 		21
C 18.1
(-2.1)
A 		10.4
(-2.9)
A 		8.9
(-3)
A 		71.5
(3)
A 		63
avr 13.2
(-2.5) 		26.4
(-1.2) 		8.5
(-3) 		69.4
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 53.8
(3)
A 		11.7
(-2.3)
A 		23.2
(-0.8)
A 		5.8
(-3)
A 		6.4
(-2.9)
A 		37.6
(1)
A 		48
B 4.5
(-2.4)
A 		6.8
(-1.4)
A 		11.6
(0.9)
A 		16.2
(3)
A 		3.7
(-2.8)
A 		3.3
(-3)
A 		13
C 4.8
(-2.8)
A 		34.6
(3)
A 		3.6
(-3)
A 		4.8
(-2.8)
A 		6.7
(-2.4)
A 		15.2
(-0.8)
A 		31
avr 21
(3) 		17.7
(1.7) 		12.8
(-0.2) 		8.9
(-1.7) 		5.6
(-3) 		18.7
(2.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.8
(-2.4)
A 		12.1
(1.3)
A 		2.4
(-3)
A 		15.9
(3)
P 		14
B 3.6
(-0.3)
A 		3.2
(-0.9)
A 		1.7
(-3)
A 		5.9
(3)
A 		4
C 6
(-1)
A 		3
(-3)
A 		3.1
(-2.9)
A 		12.1
(3)
A 		9
avr 4.5
(-1.6) 		6.1
(-0.5) 		2.4
(-3) 		11.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.9
(3)
A 		4.2
(-1.1)
A 		5.1
(-0.4)
A 		1.5
(-3)
A 		1.9
(-2.7)
A 		9.2
(2.5)
A 		8
B 1.6
(-2.2)
A 		2.3
(-0.9)
A 		2.8
(0.1)
A 		4.3
(3)
A 		1.5
(-2.4)
A 		1.2
(-3)
A 		3
C 1.8
(-2.4)
A 		10.6
(3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		2.2
(-2.2)
A 		5.1
(-0.4)
A 		10
avr 4.4
(0.9) 		5.7
(3) 		2.9
(-1.4) 		2.3
(-2.4) 		1.9
(-3) 		5.2
(2.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13761
Sequence Type Exemplar sequence
Representative Public ID T19C9.7 NCBI
Target Description T19C9.7 /REP_DB=WormBase Gene ID /WP=CE16424 /TR=O45796 /GB=CAB07490.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000010324 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17233040:17236705:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F36A4.9 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17233039-17236705(-) 61.89 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25005 hypothetical protein T19C9.7 - Caenorhabditis elegans 0.0
blast NP_494140 ZK250.1 [Caenorhabditis elegans] 0.0
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.3.1.monodomain cytochrome c All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c 5.80000019073486
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 9.8E-25
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.4E-74
Sequence
Target Sequence 
>C. ELEGANS:193757_AT
gattcattcctgttctaaagctcgtgatcttggtatatggattgacgatcgattggctta
tgacaaacatattatcatcaaagttaacgctgcaatgttcaaatgtcgacaaattcttaa
aaacttccaatctctgaatatgcctttttacttcaaactcttcaacatttacatccgacc
cattctcgaatatggatgtgaaatatatcatcccaaatcatcatcactctcagcaaaatt
agagcaacctttacgtttctactctaggcacgtttttaagagatgcaaaatttcctacga
ttcgtatgatcatcgcctgattcaagctgaccagagctctctggaacacagacggattct
ccttatattaaaaacattccacaacataataaccggtaaatattactttcacaatttagc
ccagtaccttaaaacatctaaatcgccccggtttccataccaaatgactgcaattggcaa
aacaaataacaatagcttcttacacacacatcttacaatttggaataaaatatcaaaact
ttttcctgtgccagtgtcaggcaatacgttcttcaagcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCATTCCTGTTCTAAAGCTCGT 617 429 3066 Antisense
AATCTCTGAATATGCCTTTTTACTT 331 169 3194 Antisense
AACTCTTCAACATTTACATCCGACC 190 141 3221 Antisense
TACATCCGACCCATTCTCGAATATG 667 641 3235 Antisense
CAAATCATCATCACTCTCAGCAAAA 476 193 3279 Antisense
GAGCAACCTTTACGTTTCTACTCTA 125 391 3307 Antisense
ATCATCGCCTGATTCAAGCTGACCA 544 29 3374 Antisense
CTTTCACAATTTAGCCCAGTACCTT 5 223 3471 Antisense
ATAGCTTCTTACACACACATCTTAC 683 21 3557 Antisense
AAAACTTTTTCCTGTGCCAGTGTCA 677 119 3600 Antisense
GTCAGGCAATACGTTCTTCAAGCGC 43 467 3621 Antisense
Sequence Source Affymetrix Proprietary Database