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[193756_at] ubiquinol-cytochrome c reductase complex subunit

Description T02H6.11 /REP_DB=WormBase Gene ID /WP=CE21147 /TR=Q9N5E4 /GB=AAF39958.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ubiquinol-cytochrome c reductase complex subunit
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 28      6grp_total > 81      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11318
1 2 3 4 range
A 9703
(-1.2)
P 		9806.2
(-1.1)
P 		16022.2
(3)
P 		6959.8
(-3)
P 		9062
B 10857
(-0.7)
P 		14343
(1.5)
P 		16688
(3)
P 		7104.4
(-3)
P 		9584
C 9930.7
(0.2)
P 		14040.6
(3)
P 		11126.4
(1)
P 		5369.6
(-3)
P 		8671
avr 10163.6
(-0.3) 		12729.9
(1.6) 		14612.2
(3) 		6477.9
(-3) 		8134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10476
1 2 3 4 5 6 range
A 9740.8
(-1.9)
P 		10340.5
(-1.3)
P 		12903.8
(1.7)
P 		14069.2
(3)
P 		10520
(-1)
P 		8806.1
(-3)
P 		5263
B 10367.3
(2.1)
P 		7319.7
(-0.2)
P 		8358.6
(0.6)
P 		11547.2
(3)
P 		10810.7
(2.4)
P 		3593.7
(-3)
P 		7954
C 11491.2
(2.1)
P 		8838.9
(-0.1)
P 		12641.2
(3)
P 		10535.8
(1.3)
P 		11327
(1.9)
P 		5212.3
(-3)
P 		7429
avr 10533.1
(1.5) 		8833
(-0.1) 		11301.2
(2.3) 		12050.7
(3) 		10885.9
(1.9) 		5870.7
(-3) 		6180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3283
1 2 3 4 range
A 3532.8
(1.8)
P 		2128.7
(-0.9)
P 		4188.5
(3)
P 		1018.8
(-3)
P 		3170
B 3462.2
(2)
P 		3542.4
(2.2)
P 		3867
(3)
P 		1513.9
(-3)
P 		2353
C 3287.3
(1.6)
P 		4036.8
(3)
P 		3877.9
(2.7)
P 		905.4
(-3)
P 		3131
avr 3427.4
(1.8) 		3236
(1.4) 		3977.8
(3) 		1146
(-3) 		2832

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3052
1 2 3 4 5 6 range
A 1795.6
(-3)
P 		3677.6
(3)
P 		2810.2
(0.2)
P 		3568.3
(2.7)
P 		3174.5
(1.4)
P 		2144
(-1.9)
P 		1882
B 3607.3
(1.5)
P 		2436.4
(-0.8)
P 		2029.7
(-1.6)
P 		3058.5
(0.4)
P 		4392.2
(3)
P 		1340.1
(-3)
P 		3052
C 4259.3
(3)
P 		2697
(-0.7)
P 		3217.4
(0.5)
P 		2118.8
(-2.1)
P 		3665.2
(1.6)
P 		1744.9
(-3)
P 		2514
avr 3220.7
(1.4) 		2937
(0.6) 		2685.8
(-0.2) 		2915.2
(0.5) 		3744
(3) 		1743
(-3) 		2001
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5211
Sequence Type Exemplar sequence
Representative Public ID T02H6.11 NCBI
Target Description T02H6.11 /REP_DB=WormBase Gene ID /WP=CE21147 /TR=Q9N5E4 /GB=AAF39958.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ubiquinol-cytochrome c reductase complex subunit
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061394 NCBI Caenorhabditis elegans T02H6.11 (T02H6.11) mRNA, complete cds. 11/11 None
GENEFINDER00000003378 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:700634:701123:-1 11/11 None
T02H6.11.2 ENSEMBL cdna:known chromosome:CEL140:II:700480:701131:-1 gene:T02H6.11 11/11 None
T02H6.11.3 ENSEMBL cdna:known chromosome:CEL140:II:700480:701133:-1 gene:T02H6.11 11/11 None
T02H6.11.1 ENSEMBL cdna:known chromosome:CEL140:II:700480:701133:-1 gene:T02H6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:700633-701123(-) 100.0 100.0
Public Domain and Genome References
Gene Title ubiquinol-cytochrome c reductase complex subunit
Ensembl T02H6.11
Entrez Gene 173459 Entrez gene
SwissProt Q9N5E4 EMBL-EBI
WormBase CE21147 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6122 mitochondrial electron transport, ubiquinol to cytochrome c inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8121 ubiquinol-cytochrome-c reductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39958 Hypothetical protein T02H6.11 [Caenorhabditis elegans] ref|NP_493795.1| T02H6.11 [Caenorhabditis elegans] 1.0E-72
blast CAE56013 Hypothetical protein CBG23568 [Caenorhabditis briggsae] 5.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR003197 EMBL-EBI Cytochrome bd ubiquinol oxidase, 14 kDa subunit 1.4E-13
Sequence
Target Sequence 
>C. ELEGANS:193756_AT
cacgcttcgcaagttcgcatggagcaacttgtggggaggacgcgagtacgggctccaatt
ccacgacacctactttgagccggctccagaagtcaccgaggctctcagacgccttaatct
ccaggagccacacgttttcgatcagagaaagatccgtctttcacgtgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGCTTCGCAAGTTCGCATGGAGC 526 199 72 Antisense
GTTCGCATGGAGCAACTTGTGGGGA 110 443 84 Antisense
TGGAGCAACTTGTGGGGAGGACGCG 535 549 91 Antisense
TGGGGAGGACGCGAGTACGGGCTCC 642 549 103 Antisense
CCTACTTTGAGCCGGCTCCAGAAGT 33 267 140 Antisense
CTTTGAGCCGGCTCCAGAAGTCACC 508 213 144 Antisense
TCTCAGACGCCTTAATCTCCAGGAG 274 613 174 Antisense
ACGCCTTAATCTCCAGGAGCCACAC 43 91 180 Antisense
TTAATCTCCAGGAGCCACACGTTTT 354 683 185 Antisense
GAGCCACACGTTTTCGATCAGAGAA 376 385 196 Antisense
AGAAAGATCCGTCTTTCACGTGCCC 598 71 217 Antisense
Sequence Source Affymetrix Proprietary Database