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[193754_at] gamma-soluble NSF attachment protein (SNAP-gamma)

Description Y59A8B.8 /REP_DB=WormBase Gene ID /WP=CE24502 /TR=Q9NEQ8 /GB=CAB60957.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=gamma-soluble NSF attachment protein (SNAP-gamma)
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 41      6grp_total > 92      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 761.9
(3)
P 		304.6
(-3)
M 		433.2
(-1.3)
P 		331.6
(-2.6)
P 		457
B 796.3
(3)
P 		418.3
(-2.5)
P 		491
(-1.5)
P 		385
(-3)
P 		411
C 759
(3)
P 		594.6
(0.6)
P 		575.4
(0.3)
P 		345.9
(-3)
P 		413
avr 772.4
(3) 		439.2
(-1.8) 		499.9
(-0.9) 		354.2
(-3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 430.7
(-2.2)
M 		551.2
(1.3)
P 		594.6
(2.5)
P 		610.2
(3)
P 		467
(-1.1)
P 		402.9
(-3)
P 		207
B 487
(-1.6)
P 		674.9
(1.5)
P 		414.7
(-2.8)
P 		554.6
(-0.5)
P 		761.4
(3)
P 		405.2
(-3)
P 		356
C 742.5
(2.3)
P 		605.4
(-0.1)
P 		582.3
(-0.6)
P 		446.9
(-3)
P 		779.3
(3)
P 		547.8
(-1.2)
P 		332
avr 553.4
(-0.2) 		610.5
(1.4) 		530.5
(-0.8) 		537.2
(-0.6) 		669.2
(3) 		452
(-3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 277.4
(3)
P 		66.1
(-2.5)
M 		113.2
(-1.3)
P 		48.5
(-3)
P 		229
B 253.9
(3)
P 		103.3
(-2.3)
P 		113.8
(-1.9)
P 		82.1
(-3)
P 		172
C 251.2
(3)
P 		171
(0.5)
P 		200.6
(1.4)
P 		58.3
(-3)
P 		193
avr 260.8
(3) 		113.5
(-1.5) 		142.5
(-0.6) 		63
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 79.4
(-3)
M 		196
(3)
P 		129.5
(-0.4)
P 		154.8
(0.9)
P 		140.9
(0.2)
P 		98.1
(-2)
P 		117
B 169.5
(-1)
P 		224.6
(0.6)
P 		100.7
(-3)
P 		146.9
(-1.7)
P 		309.3
(3)
P 		151.1
(-1.6)
P 		209
C 275.2
(3)
P 		184.7
(0.1)
P 		148.2
(-1.1)
P 		89.9
(-3)
P 		252.2
(2.3)
P 		183.4
(0)
P 		185
avr 174.7
(-0.3) 		201.8
(1.2) 		126.1
(-3) 		130.5
(-2.8) 		234.1
(3) 		144.2
(-2) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12958
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.8 NCBI
Target Description Y59A8B.8 /REP_DB=WormBase Gene ID /WP=CE24502 /TR=Q9NEQ8 /GB=CAB60957.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=gamma-soluble NSF attachment protein (SNAP-gamma)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075126 NCBI Caenorhabditis elegans Y59A8B.8 (Y59A8B.8) mRNA, complete cds. 11/11 A 
SNAP00000028702 ENSEMBL cdna:SNAP chromosome:CEL140:V:18050133:18068879:-1 9/11 None
GENEFINDER00000028717 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18064737:18068879:-1 10/11 None
Y59A8B.8 ENSEMBL cdna:known chromosome:CEL140:V:18056352:18068879:-1 gene:Y59A8B.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028710 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18064736-18068879(-) 100.0 100.0
Public Domain and Genome References
Gene Title gamma-soluble NSF attachment protein (SNAP-gamma)
Ensembl Y59A8B.8
Entrez Gene 180182 Entrez gene
SwissProt Q9NEQ8 EMBL-EBI
WormBase CE24502 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15557_I_AT gamma-soluble NSF attachment protein / gamma-SNAP at
ATGENOME1:17986_S_AT gamma-soluble NSF attachment protein / gamma-SNAP at
ATH1-121501:254476_AT gamma-soluble NSF attachment protein / gamma-SNAP at
CANINE:1591566_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE:1587544_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE:1586063_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE_2:CFA.11056.1.S1_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE_2:CFA.4027.1.A1_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE_2:CFAAFFX.28628.1.S1_S_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
DROSOPHILA_2:1632605_AT soluble NSF attachment protein dm
DROSGENOME1:142296_AT soluble NSF attachment protein dm
CHICKEN:GGA.12477.1.S1_AT N-ethylmaleimide-sensitive factor attachment protein, gamma gga
HG-U133_PLUS_2:210048_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U133A:210048_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-FOCUS:210048_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U133A_2:210048_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HUGENEFL:U78107_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
U133_X3P:G12804880_3P_X_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
U133_X3P:G12804880_3P_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U95D:74056_S_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U95D:74057_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HU35KSUBA:RC_AA485349_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HU35KSUBB:RC_R06228_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HU35KSUBB:RC_F10240_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
U133_X3P:HS.7181.0.S1_3P_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U133_PLUS_2:225448_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U133B:225448_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U95AV2:40289_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U95B:46252_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HU35KSUBA:AA258463_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
MG-U74BV2:108061_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MG-U74BV2:163773_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOE430A:1424069_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430A_2:1424069_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430_2:1424069_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOE430A:1424070_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430A_2:1424070_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430_2:1424070_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOE430B:1443366_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430_2:1443366_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOE430B:1443639_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MOUSE430_2:1443639_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBA:TC16201_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBA:TC20929_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBA:TC21531_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBB:TC34333_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBC:TC36823_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
RG-U34B:RC_AA956372_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34C:RC_AI071751_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAE230B:1384255_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAT230_2:1384255_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAE230A:1374075_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAT230_2:1374075_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAE230A:1376510_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAT230_2:1376510_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAE230B:1385659_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAT230_2:1385659_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34B:RC_AA956596_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34B:RC_AI011548_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34C:RC_AI072079_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34C:RC_AI175533_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5783 endoplasmic reticulum inferred from electronic annotation QuickGO AmiGO
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5478 intracellular transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60957 Hypothetical protein Y59A8B.8 [Caenorhabditis elegans] ref|NP_507527.1| Y59A8B.8 [Caenorhabditis elegans] 1.0E-153
blast CAB60957 Hypothetical protein Y59A8B.8 [Caenorhabditis elegans] ref|NP_507527.1| Y59A8B.8 [Caenorhabditis elegans] 1.0E-142
blast CAB60957 Hypothetical protein Y59A8B.8 [Caenorhabditis elegans] ref|NP_507527.1| Y59A8B.8 [Caenorhabditis elegans] 1.0E-127
blast CAE61650 Hypothetical protein CBG05584 [Caenorhabditis briggsae] 1.0E-110
blast CAE61650 Hypothetical protein CBG05584 [Caenorhabditis briggsae] 1.0E-105
blast CAE61650 Hypothetical protein CBG05584 [Caenorhabditis briggsae] 3.0E-91
blast NP_001002469 hypothetical protein LOC436742 [Danio rerio] gb|AAH76346.1| Hypothetical protein LOC436742 [Danio rerio] 3.0E-40
blast NP_001002469 hypothetical protein LOC436742 [Danio rerio] gb|AAH76346.1| Hypothetical protein LOC436742 [Danio rerio] 4.0E-35
Sequence
Target Sequence 
>C. ELEGANS:193754_AT
gcccgcgaaggagccgcaatgttgcttcgtgacatcaaagaattttcagaagccgtcgtt
ttattcgaaaaagcaattaatggttatgcggagagtggaagtctcgatacggcggcgatg
actgtcgaaaaagctgcagatgttctgaaaaatgataatcctaaggaagcacttcagatt
taccaacgtggattggctttggtccaacaatcggatcgtgcaaaaatggaatatccacgt
attggccaactcggaatcggtcttgttatagtgaatttggctctggaagattcagtggcg
gctctcaaagattatggatgggttatttgtttttgtactctggcagacccatttgtgggt
ctgccagactacaaactacagaaaataattagcagacctaaatgtcaatctccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCGCGAAGGAGCCGCAATGTTGC 76 287 250 Antisense
GAGCCGCAATGTTGCTTCGTGACAT 691 385 260 Antisense
GAATTTTCAGAAGCCGTCGTTTTAT 479 321 289 Antisense
GAAGTCTCGATACGGCGGCGATGAC 482 335 347 Antisense
GGAAGCACTTCAGATTTACCAACGT 514 531 414 Antisense
GGCTTTGGTCCAACAATCGGATCGT 648 537 444 Antisense
GGAATATCCACGTATTGGCCAACTC 153 533 477 Antisense
GCCAACTCGGAATCGGTCTTGTTAT 439 277 494 Antisense
GATTCAGTGGCGGCTCTCAAAGATT 513 431 538 Antisense
TTTGTTTTTGTACTCTGGCAGACCC 274 667 575 Antisense
GCAGACCTAAATGTCAATCTCCGGA 525 305 641 Antisense
Sequence Source Affymetrix Proprietary Database