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[193751_at] B. subtilis sfp protein; Anabaena sp. HETI protein

Description T04G9.4 /REP_DB=WormBase Gene ID /WP=CE04885 /TR=Q22171 /GB=AAA82460.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=B. subtilis sfp protein; Anabaena sp. HETI protein
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 10      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 42      6grp_total > 32      4grp_total > 58      6grp_highest_sub > De      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 848
1 2 3 4 range
A 731.8
(-1)
P 		1103.5
(1.9)
P 		1238.7
(3)
P 		483.1
(-3)
P 		756
B 765.6
(-0.5)
P 		1048.8
(1.6)
P 		1253.3
(3)
P 		405.4
(-3)
P 		848
C 718.2
(-1.2)
P 		1069.6
(1.6)
P 		1252.3
(3)
P 		484.3
(-3)
P 		768
avr 738.5
(-0.9) 		1074
(1.7) 		1248.1
(3) 		457.6
(-3) 		791

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 932
1 2 3 4 5 6 range
A 1189.5
(3)
P 		1126.3
(2.5)
P 		1061.5
(2.1)
P 		1039.6
(1.9)
P 		594.5
(-1.4)
P 		378.2
(-3)
P 		811
B 992.3
(3)
P 		836.3
(1.6)
P 		909.8
(2.2)
P 		944.9
(2.6)
P 		736.6
(0.7)
P 		333.3
(-3)
P 		659
C 1150.2
(2.2)
P 		882.5
(0.5)
P 		1265.3
(3)
P 		1034.9
(1.5)
P 		617.3
(-1.2)
P 		350.4
(-3)
P 		915
avr 1110.7
(3) 		948.4
(1.7) 		1078.9
(2.7) 		1006.5
(2.2) 		649.5
(-0.7) 		354
(-3) 		757
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 266.4
(1.6)
P 		239.5
(1)
P 		323.8
(3)
P 		70.7
(-3)
P 		253
B 244.2
(1.6)
P 		259
(2.1)
P 		290.4
(3)
P 		86.4
(-3)
P 		204
C 237.7
(-0.4)
P 		307.5
(0.8)
P 		436.5
(3)
P 		81.7
(-3)
P 		355
avr 249.4
(0.8) 		268.7
(1.2) 		350.2
(3) 		79.6
(-3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 219.3
(-0.5)
P 		400.6
(3)
P 		231.2
(-0.3)
P 		263.7
(0.3)
P 		179.4
(-1.3)
P 		92.1
(-3)
P 		309
B 345.3
(3)
P 		278.4
(1.2)
P 		220.9
(-0.4)
P 		250.3
(0.4)
P 		299.3
(1.8)
P 		124.3
(-3)
P 		221
C 426.3
(3)
P 		269.3
(-0)
P 		322
(1)
P 		208.1
(-1.2)
P 		199.7
(-1.4)
P 		117.3
(-3)
P 		309
avr 330.3
(3) 		316.1
(2.6) 		258
(1) 		240.7
(0.5) 		226.1
(0.1) 		111.2
(-3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18343
Sequence Type Exemplar sequence
Representative Public ID T04G9.4 NCBI
Target Description T04G9.4 /REP_DB=WormBase Gene ID /WP=CE04885 /TR=Q22171 /GB=AAA82460.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=B. subtilis sfp protein; Anabaena sp. HETI protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075752 NCBI Caenorhabditis elegans T04G9.4 (T04G9.4) mRNA, complete cds. 11/11 None
SNAP00000034733 ENSEMBL cdna:SNAP chromosome:CEL140:X:770845:774655:1 10/11 None
GENEFINDER00000034741 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:772959:775204:1 11/11 None
T04G9.4 ENSEMBL cdna:known chromosome:CEL140:X:772505:775300:1 gene:T04G9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:773296-775204(+) 98.77 98.77
Public Domain and Genome References
Gene Title B. subtilis sfp protein; Anabaena sp. HETI protein
Ensembl T04G9.4
Entrez Gene 180425 Entrez gene
SwissProt Q22171 EMBL-EBI
WormBase CE04885 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22771.1.S1_S_AT similar to aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase cfa
DROSOPHILA_2:1633677_AT ebony activating protein dm
DROSGENOME1:151512_AT ebony activating protein dm
CHICKEN:GGAAFFX.11012.1.S1_AT similar to aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase; alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase; 4-phosphopantetheinyl transferase gga
CHICKEN:GGAAFFX.11012.2.S1_S_AT similar to aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase; alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase; 4-phosphopantetheinyl transferase gga
HU35KSUBC:RC_R43845_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HU35KSUBD:RC_AA452866_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U133A:202169_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U133_PLUS_2:202169_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-FOCUS:202169_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U133A_2:202169_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U133A:202170_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U133_PLUS_2:202170_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U133A_2:202170_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
U133_X3P:G7106835_3P_A_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
U133_X3P:G11120434_3P_X_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
U133_X3P:G11120434_3P_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U95AV2:35761_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U95C:50668_AT Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U133_PLUS_2:224313_AT Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
HG-U133B:224313_AT Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase hs
MOUSE430_2:1430515_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MOE430B:1430515_S_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MG-U74BV2:111325_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MG-U74BV2:113797_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MG-U74CV2:168203_R_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MOE430B:1428756_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MOUSE430_2:1428756_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MOE430B:1428757_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MOUSE430_2:1428757_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase mm
MG-U74CV2:165547_AT Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase, mRNA (cDNA clone MGC:47091 IMAGE:3497754) mm
MG-U74CV2:168204_R_AT Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase, mRNA (cDNA clone MGC:47091 IMAGE:3497754) mm
MU19KSUBC:TC41991_AT Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase, mRNA (cDNA clone MGC:47091 IMAGE:3497754) mm
RG-U34C:RC_AI233726_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase (predicted) rn
RAE230B:1379353_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase (predicted) rn
RAT230_2:1379353_AT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6633 fatty acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
287 magnesium ion binding inferred from electronic annotation QuickGO AmiGO
8897 phosphopantetheinyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508153 T04G9.4 [Caenorhabditis elegans] gb|AAA82460.1| Hypothetical protein T04G9.4 [Caenorhabditis elegans] 1.0E-172
blast NP_508153 T04G9.4 [Caenorhabditis elegans] gb|AAA82460.1| Hypothetical protein T04G9.4 [Caenorhabditis elegans] 1.0E-169
blast CAE63623 Hypothetical protein CBG08117 [Caenorhabditis briggsae] 1.0E-160
blast NP_508153 T04G9.4 [Caenorhabditis elegans] gb|AAA82460.1| Hypothetical protein T04G9.4 [Caenorhabditis elegans] 1.0E-138
blast CAE63623 Hypothetical protein CBG08117 [Caenorhabditis briggsae] 1.0E-130
blast CAE75502 Hypothetical protein CBG23511 [Caenorhabditis briggsae] 9.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR008278 EMBL-EBI 4-phosphopantetheinyl transferase 9.8E-22
Pfam IPR008278 EMBL-EBI 4-phosphopantetheinyl transferase 9.8E-22
Pfam IPR008278 EMBL-EBI 4-phosphopantetheinyl transferase 9.8E-22
Sequence
Target Sequence 
>C. ELEGANS:193751_AT
gttccagcagacactacttttgggctgaacgtttctcatcaaggagattacgttgctttc
gccagcagttgctcttccaaagttggagttgatgtcatgagattggataatgaaagaaac
aacaaaaccgccgacgaatacatcaactcgatggccaaatctgcatctcctgaagagctc
cgaatgatgcgctcgcagccaaccgaagccatgaaaatgacaatgttctaccgctattgg
tgcctcaaggaagctattctcaaagccaccggtgttggaatcatgaaggatttgaatagt
ttggacttccgtgtgaaccttcaagatcgctatcgcccaggagcatttgtgacttcgact
actgtcctggaggatggaagacttcaagatcaatggatctttgaagaaacgtttgttgat
gcgaagcattctgctgcggtttgtaaagagaaaaaactcccacgcgaatgtgtgtttaga
caagacccggaagccaaaattttcttcagcaagattacatttgaaagtcttctcgaaaat
gcggaaatcaccaatcccatgccgaataacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCAGCAGACACTACTTTTGGGC 253 441 286 Antisense
TTGGGCTGAACGTTTCTCATCAAGG 71 707 305 Antisense
AAACCGCCGACGAATACATCAACTC 65 127 410 Antisense
TCTGCATCTCCTGAAGAGCTCCGAA 484 609 445 Antisense
TCTACCGCTATTGGTGCCTCAAGGA 704 611 512 Antisense
TTTGGACTTCCGTGTGAACCTTCAA 369 659 585 Antisense
GTGAACCTTCAAGATCGCTATCGCC 284 481 598 Antisense
GCCCAGGAGCATTTGTGACTTCGAC 537 287 620 Antisense
GACTTCGACTACTGTCCTGGAGGAT 684 367 636 Antisense
GATGCGAAGCATTCTGCTGCGGTTT 345 415 703 Antisense
TCACCAATCCCATGCCGAATAACGC 274 625 833 Antisense
Sequence Source Affymetrix Proprietary Database