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[193750_at] PDZ domain (Also known as DHR or GLGF). (2 domains)

Description C25G4.6 /REP_DB=WormBase Gene ID /WP=CE05307 /TR=Q18167 /GB=CAA94569.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF). (2 domains)
Cluster 6grp_total > 88      4grp_total > 21      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 14
(-2.8)
A 		12.5
(-3)
A 		13.6
(-2.9)
A 		56.8
(3)
A 		44
B 43.9
(1.4)
A 		14.5
(-2.9)
A 		13.5
(-3)
A 		54.8
(3)
A 		41
C 73.8
(3)
A 		40.1
(-0.9)
A 		22.4
(-3)
A 		58.6
(1.2)
A 		51
avr 43.9
(1.1) 		22.4
(-2.1) 		16.5
(-3) 		56.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 970
1 2 3 4 5 6 range
A 53.4
(-3)
A 		48
(-3)
A 		61.6
(-2.9)
A 		156.7
(-2.2)
A 		478.4
(0.1)
P 		879
(3)
P 		831
B 10.6
(-3)
A 		56
(-2.7)
A 		12
(-3)
A 		119.8
(-2.3)
A 		450.8
(-0.3)
P 		980.9
(3)
P 		970
C 55.6
(-2.9)
A 		97.3
(-2.6)
A 		42.9
(-3)
A 		102.5
(-2.6)
A 		475.9
(-0.2)
P 		972.6
(3)
P 		930
avr 39.9
(-3) 		67.1
(-2.8) 		38.8
(-3) 		126.3
(-2.4) 		468.4
(-0.2) 		944.2
(3) 		905
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 5.1
(-0.4)
A 		2.7
(-3)
A 		3.5
(-2.1)
A 		8.3
(3)
A 		6
B 14
(3)
A 		3.6
(-2.7)
A 		3.1
(-3)
A 		11.7
(1.7)
A 		11
C 24.4
(3)
A 		11.5
(-1.7)
A 		7.8
(-3)
A 		9.9
(-2.2)
A 		17
avr 14.5
(3) 		5.9
(-2.3) 		4.8
(-3) 		10
(0.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 9.8
(-3)
A 		17.1
(-2.8)
A 		13.4
(-2.9)
A 		39.7
(-2.1)
A 		144.4
(1)
P 		214
(3)
P 		204
B 3.7
(-3)
A 		18.6
(-2.7)
A 		2.9
(-3)
A 		31.7
(-2.5)
A 		183.1
(-0)
P 		365.8
(3)
P 		363
C 20.6
(-2.8)
A 		29.7
(-2.6)
A 		10.9
(-3)
A 		20.6
(-2.8)
A 		154
(-0.3)
P 		325.6
(3)
P 		315
avr 11.4
(-3) 		21.8
(-2.7) 		9.1
(-3) 		30.7
(-2.6) 		160.5
(0.1) 		301.8
(3) 		293
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10307
Sequence Type Exemplar sequence
Representative Public ID C25G4.6 NCBI
Target Description C25G4.6 /REP_DB=WormBase Gene ID /WP=CE05307 /TR=Q18167 /GB=CAA94569.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF). (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069979 NCBI Caenorhabditis elegans C25G4.6 (C25G4.6) mRNA, complete cds. 11/11 None
SNAP00000033052 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12455163:12456088:1 11/11 None
GENEFINDER00000033062 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12455163:12456088:1 11/11 None
C25G4.6 ENSEMBL cdna:known chromosome:CEL140:IV:12455106:12456088:1 gene:C25G4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12455168-12456094(+) 100.0 100.0
Public Domain and Genome References
Gene Title PDZ domain (Also known as DHR or GLGF). (2 domains)
Ensembl C25G4.6
Entrez Gene 178197 Entrez gene
SwissProt Q18167 EMBL-EBI
WormBase CE05307 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94569 Hypothetical protein C25G4.6 [Caenorhabditis elegans] ref|NP_502380.1| C25G4.6 [Caenorhabditis elegans] 1.0E-155
blast AAB52899 Hypothetical protein T21G5.4 [Caenorhabditis elegans] ref|NP_491965.1| T21G5.4 [Caenorhabditis elegans] 1.0E-154
blast CAE66304 Hypothetical protein CBG11554 [Caenorhabditis briggsae] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:193750_AT
agagttggaggctcgtgttcatattcctgaagatcgtgcaaagatcattcaacgccgtga
aggatacgtctatgagttggcaactcttgtttgggttcaaaatggaccaaaacttggttt
gggaatcaagcatttccagaatcgtgtgcttgtctcccgtgttgatcctggatcactcgc
cgaaaagtgtctcgttcttggagatcacttgtgtgatgttgatggtattccagtcagtga
caaggatgttgccagagaccttctcgtcaagaacattcaagaaaagggaaaagtcacttt
cgtcgtcgagcgtcccgattcgattgatgccaagcaatgggcaaagcaggcattggcaac
caatcttatgcagccaccatctgtgcaaatgaacgaggatgtgaagggcattgcgtctca
ataccgtcaagctcttccaggattgaagcctccagcaaagagtgctatgtctactggtcc
aagcgctcgtcgcgtttcaattgtcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGTTGGAGGCTCGTGTTCATATT 270 69 267 Antisense
GTTGGCAACTCTTGTTTGGGTTCAA 137 437 342 Antisense
TTTCCAGAATCGTGTGCTTGTCTCC 277 669 399 Antisense
GGATCACTCGCCGAAAAGTGTCTCG 486 511 436 Antisense
GCGTCCCGATTCGATTGATGCCAAG 606 287 576 Antisense
GGGCAAAGCAGGCATTGGCAACCAA 707 493 605 Antisense
TCTTATGCAGCCACCATCTGTGCAA 498 615 630 Antisense
GCATTGCGTCTCAATACCGTCAAGC 609 307 674 Antisense
CCAGGATTGAAGCCTCCAGCAAAGA 105 269 703 Antisense
GTGCTATGTCTACTGGTCCAAGCGC 281 479 728 Antisense
CGCTCGTCGCGTTTCAATTGTCGAG 565 255 750 Antisense
Sequence Source Affymetrix Proprietary Database