[Home] | [Total List]

[193747_s_at] translation initiation protein SPT5 like

Description K08E4.1 /REP_DB=WormBase Gene ID /WP=CE06145 /GEN=spt-5 /TR=Q21338 /GB=CAA92985.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=translation initiation protein SPT5 like
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 75      6grp_total > 17      4grp_total > 51      6grp_highest_sub > Cu      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 357
1 2 3 4 range
A 1078.8
(0.6)
P 		1219.7
(3)
P 		862.3
(-3)
P 		903.6
(-2.3)
P 		357
B 989
(-2.7)
P 		1090.9
(0.6)
P 		1162.5
(3)
P 		980.4
(-3)
P 		182
C 1090.2
(1.2)
P 		1045.5
(0.2)
P 		1166.4
(3)
P 		906.8
(-3)
P 		260
avr 1052.7
(0.9) 		1118.7
(3) 		1063.7
(1.2) 		930.3
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 890.7
(2.8)
P 		896.5
(3)
P 		840.8
(1.6)
P 		664.6
(-3)
P 		677.4
(-2.7)
P 		798.8
(0.5)
P 		232
B 950.6
(3)
P 		692.1
(-2.1)
P 		810.5
(0.2)
P 		812.7
(0.3)
P 		645.1
(-3)
P 		812.8
(0.3)
P 		306
C 903.7
(2.9)
P 		755.3
(-0.5)
P 		909.9
(3)
P 		648.1
(-3)
P 		703.2
(-1.7)
P 		796.2
(0.4)
P 		262
avr 915
(3) 		781.3
(-0.3) 		853.7
(1.5) 		708.5
(-2.2) 		675.2
(-3) 		802.6
(0.2) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 392.8
(3)
P 		264.8
(0.1)
P 		225.4
(-0.9)
P 		132.3
(-3)
P 		261
B 315.4
(3)
P 		269.4
(0.4)
P 		269.4
(0.4)
P 		208.9
(-3)
P 		107
C 360.9
(1.9)
P 		300.6
(0.5)
P 		406.5
(3)
P 		152.9
(-3)
P 		254
avr 356.4
(3) 		278.3
(0.6) 		300.4
(1.2) 		164.7
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 164.2
(-3)
P 		318.8
(3)
P 		183.1
(-2.3)
P 		168.6
(-2.8)
P 		204.4
(-1.4)
P 		194.5
(-1.8)
P 		155
B 330.7
(3)
P 		230.4
(-1.5)
P 		196.8
(-3)
P 		215.2
(-2.2)
P 		262.1
(-0.1)
P 		303.1
(1.8)
P 		134
C 334.9
(3)
P 		230.5
(-0.1)
P 		231.6
(-0)
P 		130.3
(-3)
P 		227.5
(-0.1)
P 		266.5
(1)
P 		205
avr 276.6
(3) 		259.9
(2) 		203.8
(-1.2) 		171.4
(-3) 		231.3
(0.4) 		254.7
(1.8) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193747_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8929
Sequence Type Exemplar sequence
Representative Public ID K08E4.1 NCBI
Target Description K08E4.1 /REP_DB=WormBase Gene ID /WP=CE06145 /GEN=spt-5 /TR=Q21338 /GB=CAA92985.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=translation initiation protein SPT5 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069882 NCBI Caenorhabditis elegans SPT transcription factor family member (spt-5) (spt-5) mRNA, complete cds. 11/11 None
SNAP00000000846 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12053380:12055521:1 11/11 None
GENEFINDER00000000857 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12053433:12055521:1 11/11 None
K08E4.1 ENSEMBL cdna:known chromosome:CEL140:IV:12051457:12055716:1 gene:K08E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12051473-12055527(+) 97.71 100.0
Public Domain and Genome References
Gene Title translation initiation protein SPT5 like
Gene Symbol spt-5
Ensembl K08E4.1
Entrez Gene 178143 Entrez gene
SwissProt Q21338 EMBL-EBI
WormBase CE06145 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:255136_S_AT KOW domain-containing transcription factor family protein at
CANINE_2:CFA.18765.1.S1_S_AT similar to suppressor of Ty 5 homolog cfa
CANINE_2:CFA.21452.1.S1_S_AT similar to suppressor of Ty 5 homolog cfa
CANINE_2:CFAAFFX.9195.1.S1_S_AT similar to suppressor of Ty 5 homolog cfa
DROSOPHILA_2:1626448_AT dm
DROSGENOME1:152632_AT dm
CHICKEN:GGA.7037.1.S1_S_AT suppressor of Ty 5 homolog (S. cerevisiae) gga
CHICKEN:GGA.7037.2.S1_S_AT suppressor of Ty 5 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.9263.1.S1_S_AT suppressor of Ty 5 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.9264.1.S1_S_AT suppressor of Ty 5 homolog (S. cerevisiae) gga
HG-U133A:201480_S_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
HG-FOCUS:201480_S_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:201480_S_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
HG-U133A_2:201480_S_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
HUGENEFL:U56402_S_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
U133_X3P:G4507312_3P_A_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
HG-U95AV2:35826_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
HG-U95D:72397_F_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
HG-U95D:74385_S_AT suppressor of Ty 5 homolog (S. cerevisiae) hs
HG-U95D:68953_AT Suppressor of Ty 5 homolog (S. cerevisiae) hs
MU11KSUBB:W12878_G_AT suppressor of Ty 5 homolog (S. cerevisiae) mm
MU11KSUBB:W12878_AT suppressor of Ty 5 homolog (S. cerevisiae) mm
MG-U74AV2:100094_AT suppressor of Ty 5 homolog (S. cerevisiae) mm
MOE430A:1424255_AT suppressor of Ty 5 homolog (S. cerevisiae) mm
MOUSE430A_2:1424255_AT suppressor of Ty 5 homolog (S. cerevisiae) mm
MOUSE430_2:1424255_AT suppressor of Ty 5 homolog (S. cerevisiae) mm
MU19KSUBA:TC14400_S_AT Suppressor of Ty 5 homolog (S. cerevisiae) (Supt5h), mRNA mm
MU19KSUBC:TC38625_AT Suppressor of Ty 5 homolog (S. cerevisiae) (Supt5h), mRNA mm
RG-U34A:L41685MRNA_AT suppressor of Ty 5 homolog (S. cerevisiae) rn
RG-U34A:RC_AA858586_AT suppressor of Ty 5 homolog (S. cerevisiae) rn
RG-U34A:RC_AA892053_AT suppressor of Ty 5 homolog (S. cerevisiae) rn
RAE230A:1372094_AT suppressor of Ty 5 homolog (S. cerevisiae) rn
RAT230_2:1372094_AT suppressor of Ty 5 homolog (S. cerevisiae) rn
YEAST_2:1769802_AT Protein that forms a complex with Spt4p and mediates both activation and inhibition of transcription elongation; Spt4p-Spt5p complex also plays a role in pre-mRNA processing Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3711 transcriptional elongation regulator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92685 Hypothetical protein K08E4.1 [Caenorhabditis elegans] emb|CAA92985.1| Hypothetical protein K08E4.1 [Caenorhabditis elegans] ref|NP_502283.1| SPT transcription factor family member (spt-5) [Caenorhabditis elegans] 0.0
blast CAE62170 Hypothetical protein CBG06217 [Caenorhabditis briggsae] 0.0
blast AAH58598 Suppressor of Ty 5 homolog [Mus musculus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005824 EMBL-EBI KOW 3.8E-4
Pfam IPR005824 EMBL-EBI KOW 1.3E-9
Pfam IPR005824 EMBL-EBI KOW 3.7E-5
Pfam IPR005100 EMBL-EBI Supt5 repeat 2.9E-19
Pfam IPR005100 EMBL-EBI Supt5 repeat 9.9E-20
Pfam IPR005824 EMBL-EBI KOW 3.7E-5
Pfam IPR005824 EMBL-EBI KOW 3.7E-5
Sequence
Target Sequence 
>C. ELEGANS:193747_S_AT
ttcgtctccaacttatgattctcctccacactcgtacgttgtgccaactccaggtgcaat
gctcaatccagcaactccgggagcctatcacgttgatacacctggattcgctgctccaat
gacgccaggaagtggaggagcatacgatcaatatgttgcgccttctccattcgctggcta
cgacagtaacaactacaacaatgccgatggagctattgagcaaattccggaccacttcct
ggctcaaggtgtgtggattgtgcagaatctgtgtgtgcaaatcaaggaccacgaagggcg
attcaacggacgtgaggcgatcattaaagatgttaccgatggaaaagtggatgtctacat
gccagatcacaagtgcaacttggaagttgatttcgatcagctaactccaatgaaaccgca
accag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGTCTCCAACTTATGATTCTCCT 633 695 3057 Antisense
GTTGTGCCAACTCCAGGTGCAATGC 522 437 3094 Antisense
AATCCAGCAACTCCGGGAGCCTATC 495 167 3121 Antisense
GGAGCCTATCACGTTGATACACCTG 168 523 3136 Antisense
GCTGCTCCAATGACGCCAGGAAGTG 569 297 3166 Antisense
CTCCATTCGCTGGCTACGACAGTAA 257 235 3221 Antisense
ACCACTTCCTGGCTCAAGGTGTGTG 541 83 3287 Antisense
GGACCACGAAGGGCGATTCAACGGA 641 509 3342 Antisense
GGATGTCTACATGCCAGATCACAAG 619 513 3405 Antisense
TTGATTTCGATCAGCTAACTCCAAT 305 705 3443 Antisense
CTAACTCCAATGAAACCGCAACCAG 510 225 3457 Antisense
Sequence Source Affymetrix Proprietary Database