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[193746_s_at] beta-1,6-N-acetylglucosaminyltransferase

Description F44F4.6 /REP_DB=WormBase Gene ID /WP=CE01002 /GEN=gly-1 /TR=Q20406 /GB=CAA85457.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=beta-1,6-N-acetylglucosaminyltransferase
Cluster 6grp_total > 34      4grp_total > 14      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 47.2
(1.2)
A 		27.5
(-2.1)
A 		22
(-3)
A 		58.2
(3)
A 		36
B 48.5
(3)
A 		33.5
(0.4)
P 		13.8
(-3)
A 		14
(-3)
A 		35
C 37.3
(-0.7)
A 		9.3
(-3)
A 		34.9
(-0.9)
M 		83.8
(3)
A 		75
avr 44.3
(1.4) 		23.4
(-3) 		23.6
(-3) 		52
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 61.2
(0.1)
A 		51.4
(-0.9)
P 		88.1
(3)
P 		46.9
(-1.4)
A 		31.6
(-3)
A 		43.1
(-1.8)
A 		57
B 62
(3)
P 		47.5
(0.9)
P 		21.3
(-3)
A 		29.4
(-1.8)
A 		34.5
(-1.1)
P 		21.5
(-3)
A 		41
C 19.2
(-3)
A 		54.8
(3)
P 		36.9
(-0)
A 		25
(-2)
A 		27.2
(-1.7)
A 		33.8
(-0.5)
A 		36
avr 47.5
(1.9) 		51.2
(3) 		48.8
(2.3) 		33.8
(-2.2) 		31.1
(-3) 		32.8
(-2.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 17.2
(3)
A 		6
(-2.8)
A 		5.7
(-3)
A 		8.5
(-1.5)
A 		12
B 15.5
(3)
A 		8.3
(-0.5)
P 		3.2
(-2.9)
A 		3
(-3)
A 		13
C 12.4
(2.1)
A 		2.7
(-3)
A 		12.2
(2)
M 		14.1
(3)
A 		11
avr 15
(3) 		5.7
(-3) 		7
(-2.2) 		8.5
(-1.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.3
(-1.9)
A 		18.3
(2.4)
P 		19.2
(3)
P 		11.9
(-1.5)
A 		9.5
(-3)
A 		10.5
(-2.4)
A 		10
B 21.6
(3)
P 		15.8
(0.9)
P 		5.2
(-3)
A 		7.8
(-2)
A 		14
(0.2)
P 		8
(-2)
A 		16
C 7.1
(-1.9)
A 		16.7
(3)
P 		9.4
(-0.7)
A 		5
(-3)
A 		8.8
(-1.1)
A 		11.3
(0.2)
A 		12
avr 13.3
(0.5) 		16.9
(3) 		11.3
(-0.9) 		8.2
(-3) 		10.8
(-1.2) 		9.9
(-1.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193746_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2655
Sequence Type Exemplar sequence
Representative Public ID F44F4.6 NCBI
Target Description F44F4.6 /REP_DB=WormBase Gene ID /WP=CE01002 /GEN=gly-1 /TR=Q20406 /GB=CAA85457.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=beta-1,6-N-acetylglucosaminyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063944 NCBI Caenorhabditis elegans F44F4.6 (beta-1,6-N-acetylglucosaminyltransferase) mRNA, complete cds. 11/11 None
SNAP00000037183 ENSEMBL cdna:SNAP chromosome:CEL140:II:10899953:10902046:-1 11/11 None
GENEFINDER00000037197 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10899953:10902115:-1 11/11 None
F44F4.6 ENSEMBL cdna:known chromosome:CEL140:II:10899897:10902205:-1 gene:F44F4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10899949-10902112(-) 100.0 100.0
Public Domain and Genome References
Gene Title beta-1,6-N-acetylglucosaminyltransferase
Gene Symbol gly-1
Ensembl F44F4.6
Entrez Gene 174679 Entrez gene
SwissProt Q20406 EMBL-EBI
WormBase CE01002 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85457 Hypothetical protein F44F4.6 [Caenorhabditis elegans] ref|NP_496345.1| F44F4.6 [Caenorhabditis elegans] gb|AAK94758.1| GLY-1 [Caenorhabditis elegans] gb|AAK94757.1| GLY-1 [Caenorhabditis elegans] 0.0
blast CAE73234 Hypothetical protein CBG20642 [Caenorhabditis briggsae] 1.0E-169
blast CAB05620 Hypothetical protein T15D6.2 [Caenorhabditis elegans] ref|NP_493135.2| T15D6.2 [Caenorhabditis elegans] gb|AAK94760.1| GLY-16 [Caenorhabditis elegans] 5.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.1E-89
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.1E-89
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496345.1 1 29-51
F44F4.6 1 29-51
SNAP00000037183 1 12-34
GENEFINDER00000037197 1 29-51
Sequence
Target Sequence 
>C. ELEGANS:193746_S_AT
gtatgtcagttgtagttccacgagaaggagctgactatttgatttccagcccacgagttc
agaaattgctgaaatatttgtcaaaaacatggattccagatgaatcattttggtctaccg
tactgggatccccggctttgctcccagtccccggatcaattcgagttcgagatattctat
ggttacgtaaaaacttcaaacttcggcctccatatgagaacacagttaattcaattggaa
catcctatattggaagatatcaagtatggggatggcagaaggaatgttttggaaaagtca
aggatttctcgtgtgtatttggtgtggaggatattgaagaaataatgacaagacctgaac
tagttgctcataaactttatctcgaatttcagccggctgcttttatgtgtatgcttaaag
aagtccgtcgtcgaagtttaagcccagatgctcacctgttcagcgcaaggagttattctc
aaatgccgactgtagaattatatcaagggaaggcaataactcagttgacaaatccaaatt
ggctagtcagagactcattctacaatccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGTCAGTTGTAGTTCCACGAGA 433 455 830 Antisense
CTGACTATTTGATTTCCAGCCCACG 618 237 860 Antisense
GAATCATTTTGGTCTACCGTACTGG 505 325 931 Antisense
AGTCCCCGGATCAATTCGAGTTCGA 672 57 975 Antisense
TTCAAACTTCGGCCTCCATATGAGA 114 685 1024 Antisense
GACAAGACCTGAACTAGTTGCTCAT 278 365 1176 Antisense
CTTTATCTCGAATTTCAGCCGGCTG 422 223 1204 Antisense
CAGCCGGCTGCTTTTATGTGTATGC 685 201 1219 Antisense
TCCGTCGTCGAAGTTTAAGCCCAGA 422 593 1253 Antisense
GCTCACCTGTTCAGCGCAAGGAGTT 367 299 1279 Antisense
GTCAGAGACTCATTCTACAATCCAC 301 467 1375 Antisense
Sequence Source Affymetrix Proprietary Database