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[193743_at] Ubiquitin carboxyl-terminal hydrolases family 2

Description C07A9.10 /REP_DB=WormBase Gene ID /WP=CE00496 /TR=SW:P34321 /GB=CAA82337.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ubiquitin carboxyl-terminal hydrolases family 2
Cluster 6grp_total > 53      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 31.6
(1.2)
A 		10.5
(-3)
A 		15.5
(-2)
A 		40.6
(3)
A 		30
B 13.4
(-1.6)
A 		24.8
(1.2)
A 		7.7
(-3)
A 		32
(3)
A 		24
C 42.5
(1.2)
A 		8.7
(-2.4)
A 		2.9
(-3)
A 		59.6
(3)
A 		57
avr 29.2
(0.5) 		14.7
(-2) 		8.7
(-3) 		44.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 19.6
(-1)
A 		11.9
(-2)
A 		52.7
(3)
A 		13.7
(-1.8)
A 		42.7
(1.8)
A 		3.5
(-3)
A 		49
B 5.9
(-3)
A 		24.8
(1.3)
A 		6.3
(-2.9)
A 		16.2
(-0.7)
A 		32.3
(3)
A 		12.3
(-1.5)
A 		26
C 7.4
(-2.5)
A 		28.5
(3)
A 		26.9
(2.6)
A 		8.1
(-2.3)
A 		5.3
(-3)
A 		28.4
(3)
A 		23
avr 11
(-3) 		21.7
(0.6) 		28.6
(3) 		12.7
(-2.4) 		26.8
(2.4) 		14.7
(-1.7) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.5
(3)
A 		2.3
(-3)
A 		4.1
(-1.8)
A 		5.9
(-0.7)
A 		9
B 4.3
(0)
A 		6.1
(2.2)
A 		1.8
(-3)
A 		6.8
(3)
A 		5
C 14.1
(3)
A 		2.5
(-2.3)
A 		1
(-3)
A 		10
(1.1)
A 		13
avr 10
(3) 		3.6
(-2) 		2.3
(-3) 		7.6
(1.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.6
(-1.6)
A 		4.2
(-1.3)
A 		11.5
(2.3)
A 		3.5
(-1.7)
A 		12.9
(3)
A 		0.8
(-3)
A 		12
B 2.1
(-2.7)
A 		8.3
(0.5)
A 		1.5
(-3)
A 		4.3
(-1.6)
A 		13.1
(3)
A 		4.6
(-1.4)
A 		12
C 2.7
(-2.2)
A 		8.7
(2.4)
A 		6.9
(1)
A 		1.6
(-3)
A 		1.7
(-2.9)
A 		9.5
(3)
A 		8
avr 2.8
(-3) 		7.1
(1) 		6.6
(0.6) 		3.1
(-2.7) 		9.2
(3) 		5
(-0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6238
Sequence Type Exemplar sequence
Representative Public ID C07A9.10 NCBI
Target Description C07A9.10 /REP_DB=WormBase Gene ID /WP=CE00496 /TR=SW:P34321 /GB=CAA82337.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ubiquitin carboxyl-terminal hydrolases family 2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066740 NCBI Caenorhabditis elegans C07A9.10 (C07A9.10) mRNA, complete cds. 11/11 None
SNAP00000039325 ENSEMBL cdna:SNAP chromosome:CEL140:III:9685066:9686622:-1 11/11 None
C07A9.10 ENSEMBL cdna:known chromosome:CEL140:III:9685066:9686622:-1 gene:C07A9.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039337 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9685061-9686618(-) 76.08 100.0
Public Domain and Genome References
Gene Title Ubiquitin carboxyl-terminal hydrolases family 2
Ensembl C07A9.10
Entrez Gene 182358 Entrez gene
SwissProt P34321 EMBL-EBI
WormBase CE00496 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82337 Hypothetical protein C07A9.10 [Caenorhabditis elegans] ref|NP_499141.1| C07A9.10 [Caenorhabditis elegans] sp|P34321|YKT0_CAEEL Hypothetical protein C07A9.10 in chromosome III 1.0E-148
blast CAI79130 Hypothetical protein C07A9.13 [Caenorhabditis elegans] ref|NP_001021156.1| C07A9.13 [Caenorhabditis elegans] 9.0E-48
blast NP_491455 F54D7.1 [Caenorhabditis elegans] 9.0E-16
Sequence
Target Sequence 
>C. ELEGANS:193743_AT
cttggaaagctgtgatccgcaccacagaaacccgcgaaccaaagaatataatttacaaga
agcaggttactgtattatttcaagctaatgcaaccatctcaggtccaccgctcgttctcc
ctcgcccggtgaagattcatcatgcctcttcatatctttccctccgcaacctcggagatg
attgcttcatgaatgttatactacaacttttgaagcgttcatctttcgaggatcatttcc
gtacttgttgcgtagggacaattcatgaagagctgaggaaaattctatctggtgagaaag
acgtcgttggtgatctgagaagaatgcacagctatagcaagttgcacaagggacgcaata
tgtgtacaacagcgttgaaagttttgatgaaggacttggctgcagagtgtaaacgcaata
ccgaagtaaaggttctccaccccacgcggttcaagagtcatctggtttgcagtgctcaag
gctgcaaaaatccgacgattccggacaagccatatttcaaagtggcattgccaagtggaa
aggctttcactgatatggtggtccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGGAAAGCTGTGATCCGCACCAC 579 215 173 Antisense
CACAGAAACCCGCGAACCAAAGAAT 563 69 195 Antisense
GCTAATGCAACCATCTCAGGTCCAC 312 297 256 Antisense
GCCCGGTGAAGATTCATCATGCCTC 281 287 296 Antisense
TTTCCCTCCGCAACCTCGGAGATGA 523 667 329 Antisense
GAAGCGTTCATCTTTCGAGGATCAT 656 343 384 Antisense
TTTCCGTACTTGTTGCGTAGGGACA 19 223 408 Antisense
CCCACGCGGTTCAAGAGTCATCTGG 293 257 613 Antisense
GAGTCATCTGGTTTGCAGTGCTCAA 158 401 627 Antisense
GACGATTCCGGACAAGCCATATTTC 626 367 666 Antisense
GGCTTTCACTGATATGGTGGTCCAG 111 539 714 Antisense
Sequence Source Affymetrix Proprietary Database