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[193741_at] human leukocyte surface protein (weak)

Description T03G11.8 /REP_DB=WormBase Gene ID /WP=CE04875 /GEN=zig-6 /TR=Q22125 /GB=AAA82451.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=human leukocyte surface protein (weak)
Cluster 4grp_high_8_8 > 39      6grp_total > 72      4grp_total > 40      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 62.8
(-3)
M 		179.9
(0.8)
P 		246.7
(3)
P 		165.7
(0.4)
P 		184
B 114.2
(-3)
P 		212.4
(2.5)
P 		221
(3)
P 		183.1
(0.9)
P 		107
C 107.4
(-3)
A 		146.8
(-0.7)
P 		211
(3)
P 		185.4
(1.5)
P 		104
avr 94.8
(-3) 		179.7
(0.9) 		226.2
(3) 		178.1
(0.8) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 531
1 2 3 4 5 6 range
A 41.5
(-3)
A 		167.3
(-1.4)
P 		484.4
(2.6)
P 		514.5
(3)
P 		360.3
(1)
P 		63.6
(-2.7)
A 		473
B 129.7
(-2.9)
A 		208.7
(-1.1)
P 		385.9
(3)
P 		388.1
(3)
P 		385.3
(2.9)
P 		123.6
(-3)
P 		265
C 54.3
(-3)
A 		231.3
(-0.9)
P 		338.2
(0.3)
P 		572.1
(3)
P 		264.4
(-0.6)
P 		95.8
(-2.5)
P 		518
avr 75.2
(-3) 		202.4
(-1.2) 		402.8
(1.7) 		491.6
(3) 		336.7
(0.8) 		94.3
(-2.7) 		416
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 22.9
(-3)
M 		39.1
(-0.7)
P 		64.5
(3)
P 		24.3
(-2.8)
P 		42
B 36.4
(-3)
P 		52.5
(3)
P 		51.2
(2.5)
P 		39
(-2)
P 		16
C 35.6
(-2.4)
A 		42.2
(-1.5)
P 		73.5
(3)
P 		31.3
(-3)
P 		42
avr 31.6
(-3) 		44.6
(-0.5) 		63.1
(3) 		31.5
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 7.6
(-3)
A 		59.5
(-0.5)
P 		105.5
(1.8)
P 		130.5
(3)
P 		108.7
(1.9)
P 		15.5
(-2.6)
A 		123
B 45.1
(-3)
A 		69.5
(-1.7)
P 		93.7
(-0.4)
P 		102.8
(0.1)
P 		156.5
(3)
P 		46.1
(-2.9)
P 		111
C 20.1
(-3)
A 		70.6
(0.2)
P 		86.1
(1.2)
P 		115.1
(3)
P 		85.6
(1.1)
P 		32.1
(-2.2)
P 		95
avr 24.3
(-3) 		66.5
(-0.3) 		95.1
(1.6) 		116.1
(2.9) 		116.9
(3) 		31.2
(-2.6) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16090
Sequence Type Exemplar sequence
Representative Public ID T03G11.8 NCBI
Target Description T03G11.8 /REP_DB=WormBase Gene ID /WP=CE04875 /GEN=zig-6 /TR=Q22125 /GB=AAA82451.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=human leukocyte surface protein (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076481 NCBI Caenorhabditis elegans 2 (Zwei) IG-domain protein family member (zig-6) (zig-6) mRNA, complete cds. 11/11 None
SNAP00000028929 ENSEMBL cdna:SNAP chromosome:CEL140:X:5186981:5188828:-1 11/11 None
GENEFINDER00000028936 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5186981:5188931:-1 11/11 None
T03G11.8 ENSEMBL cdna:known chromosome:CEL140:X:5188097:5188828:-1 gene:T03G11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5188097-5188829(-) 100.0 100.0
Public Domain and Genome References
Gene Title human leukocyte surface protein (weak)
Gene Symbol zig-6
Ensembl T03G11.8
Entrez Gene 192089 Entrez gene
SwissProt Q22125 EMBL-EBI
WormBase CE04875 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from sequence similarity QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE68710 Hypothetical protein CBG14634 [Caenorhabditis briggsae] 1.0E-111
blast CAE68710 Hypothetical protein CBG14634 [Caenorhabditis briggsae] 1.0E-107
blast NP_508882 2 (Zwei) IG-domain protein family member (zig-6) [Caenorhabditis elegans] gb|AAA82451.1| 2 (zwei) ig-domain protein protein 6 [Caenorhabditis elegans] 1.0E-103
blast NP_508882 2 (Zwei) IG-domain protein family member (zig-6) [Caenorhabditis elegans] gb|AAA82451.1| 2 (zwei) ig-domain protein protein 6 [Caenorhabditis elegans] 1.0E-100
blast NP_508882 2 (Zwei) IG-domain protein family member (zig-6) [Caenorhabditis elegans] gb|AAA82451.1| 2 (zwei) ig-domain protein protein 6 [Caenorhabditis elegans] 2.0E-95
blast CAE68710 Hypothetical protein CBG14634 [Caenorhabditis briggsae] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.9E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.6E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.9E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.6E-5
Sequence
Target Sequence 
>C. ELEGANS:193741_AT
aataaccatttccattagcccaaatgcaaacccagttcaaaaaccaattggtcaccagat
ttctcttgtgtgctctattaagaagactgatagtaatggagaaaaaccaggaatgatctg
gaagaaacatggtggactagaccgaactggaaacgtcgaggtcaaaaaactagacgacta
cactctcggacttattatcagaaattccagtgtggaggacagtggtgtgtactattgtca
agctcaggttggaagtaaagtatacatgaacaagatggatgtaatcgtttttgaggacat
tgtcttccgagacaaacaacttcactttggtcaagttctagcgactgcttcggttaatat
ttcatgtgaggtatccgccaagaaagacagtgtcataacttactggactcgtcacgggaa
gcaaatcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAACCATTTCCATTAGCCCAAAT 308 163 33 Antisense
TAGCCCAAATGCAAACCCAGTTCAA 19 649 48 Antisense
GTCACCAGATTTCTCTTGTGTGCTC 538 465 83 Antisense
GACTACACTCTCGGACTTATTATCA 429 373 208 Antisense
GTGGTGTGTACTATTGTCAAGCTCA 500 489 254 Antisense
GTCTTCCGAGACAAACAACTTCACT 470 467 334 Antisense
TTGGTCAAGTTCTAGCGACTGCTTC 109 709 359 Antisense
GCGACTGCTTCGGTTAATATTTCAT 612 289 373 Antisense
ATTTCATGTGAGGTATCCGCCAAGA 601 15 391 Antisense
TCATAACTTACTGGACTCGTCACGG 627 619 425 Antisense
GACTCGTCACGGGAAGCAAATCCTG 338 373 438 Antisense
Sequence Source Affymetrix Proprietary Database