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[193738_s_at]

Description JC8.10 /REP_DB=WormBase Gene ID /WP=CE28239 /GB=CAC44311.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Inositol polyphosphate phosphatase, catalytic domain homologues
Cluster 6grp_total > 05      4grp_total > 45      6grp_cgc > 42      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 404.7
(3)
P 		328.3
(0.7)
A 		204.2
(-3)
A 		207.6
(-2.9)
A 		201
B 343.2
(3)
P 		331.7
(2.7)
A 		224.5
(-0.2)
A 		119.3
(-3)
A 		224
C 413.3
(3)
P 		390.4
(2.5)
A 		239.2
(-1)
A 		152.6
(-3)
A 		261
avr 387.1
(3) 		350.1
(2) 		222.6
(-1.3) 		159.8
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 302.5
(0.9)
P 		346.1
(3)
P 		219.5
(-3)
P 		240.7
(-2)
A 		276.7
(-0.3)
A 		266.7
(-0.8)
A 		127
B 308.9
(3)
P 		291
(2)
P 		248.9
(-0.2)
P 		202.5
(-2.7)
P 		248
(-0.3)
A 		196.8
(-3)
A 		112
C 355.1
(3)
P 		344
(2.6)
P 		315
(1.5)
M 		213.7
(-2.4)
P 		264.2
(-0.5)
A 		199.1
(-3)
A 		156
avr 322.2
(2.7) 		327
(3) 		261.1
(-0.7) 		219
(-3) 		263
(-0.6) 		220.9
(-2.9) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 147.4
(3)
P 		71.3
(-0.9)
A 		53.4
(-1.8)
A 		30.4
(-3)
A 		117
B 109.4
(3)
P 		81.9
(1)
A 		52
(-1.1)
A 		25.4
(-3)
A 		84
C 136.8
(3)
P 		112.2
(1.7)
A 		83.4
(0.1)
A 		25.7
(-3)
A 		111
avr 131.2
(3) 		88.5
(0.5) 		62.9
(-0.9) 		27.2
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 55.8
(-2.4)
P 		123.1
(3)
P 		47.8
(-3)
P 		61.1
(-1.9)
A 		83.5
(-0.2)
A 		64.9
(-1.6)
A 		75
B 107.5
(3)
P 		96.9
(1.8)
P 		60.4
(-2.2)
P 		53.6
(-3)
P 		100.8
(2.3)
A 		73.4
(-0.8)
A 		54
C 131.6
(3)
P 		105
(1.2)
P 		80.2
(-0.5)
M 		43
(-3)
P 		85.5
(-0.1)
A 		66.7
(-1.4)
A 		89
avr 98.3
(1.9) 		108.3
(3) 		62.8
(-1.9) 		52.6
(-3) 		89.9
(1) 		68.3
(-1.3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193738_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9469
Sequence Type Exemplar sequence
Representative Public ID JC8.10 NCBI
Target Description JC8.10 /REP_DB=WormBase Gene ID /WP=CE28239 /GB=CAC44311.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Inositol polyphosphate phosphatase, catalytic domain homologues
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028094(11), NM_001028095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028094 NCBI Caenorhabditis elegans UNCoordinated family member (unc-26) (unc-26) mRNA, complete cds. 11/11 None
NM_001028095 NCBI Caenorhabditis elegans UNCoordinated family member (unc-26) (unc-26) mRNA, complete cds. 11/11 None
JC8.10b ENSEMBL cdna:known chromosome:CEL140:IV:13261526:13272483:-1 gene:JC8.10 11/11 A 
JC8.10a ENSEMBL cdna:known chromosome:CEL140:IV:13261526:13272483:-1 gene:JC8.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13261843-13265398(-) 100.0 100.0
Public Domain and Genome References
Ensembl JC8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC44311 Hypothetical protein JC8.10a [Caenorhabditis elegans] emb|CAB05234.2| Hypothetical protein JC8.10a [Caenorhabditis elegans] ref|NP_001023265.1| UNCoordinated family member (unc-26) [Caenorhabditis elegans] gb|AAG18575.1| synaptojanin UNC-26B [Caenorhabditis elegans] 0.0
blast CAC70127 Hypothetical protein JC8.10b [Caenorhabditis elegans] emb|CAC70096.1| Hypothetical protein JC8.10b [Caenorhabditis elegans] ref|NP_001023266.1| UNCoordinated family member (unc-26) [Caenorhabditis elegans] gb|AAG18574.1| synaptojanin UNC-26A [Caenorhabditis elegans] 0.0
blast CAE58631 Hypothetical protein CBG01799 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 5.1E-71
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.8E-44
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.8E-44
Sequence
Target Sequence 
>C. ELEGANS:193738_S_AT
gtcaccggattgggcttatgctttgaagccacatctttcagattttgatttggaatcgtt
tgaagtgacggcagaggaagaggcattacttggtggtactgatggtgccgtttttgaatt
tgcagacgaagacgaggacgcaatcagtgtgtctagtctgacgcttactggttcggctcc
cgatcgacctcgtccaccatcagcaagaagtgaagcgatcagtgtagccaaacttgaatg
gccaacagaacaaccaaacgtcctctccacatcaatgccaacacgagcttcatcagcttc
tcttgccaatagttcttggtatgagcatgtaccaccacttgctccacctcaatcaaacaa
taataaaagccctccacaagcttgtctattcaatccattcactcaatctgcaccatcccc
ggctccaccaccatccacgattcctcttccaccgactcgtggagcatcagttggaccagg
tcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACCGGATTGGGCTTATGCTTTG 546 463 738 Antisense
GTGGTACTGATGGTGCCGTTTTTGA 147 489 830 Antisense
GTGTGTCTAGTCTGACGCTTACTGG 176 487 884 Antisense
GCCAACAGAACAACCAAACGTCCTC 256 277 978 Antisense
AACACGAGCTTCATCAGCTTCTCTT 92 137 1017 Antisense
TGAGCATGTACCACCACTTGCTCCA 220 569 1059 Antisense
CTTGCTCCACCTCAATCAAACAATA 50 219 1075 Antisense
TAAAAGCCCTCCACAAGCTTGTCTA 133 639 1101 Antisense
AGCTTGTCTATTCAATCCATTCACT 246 79 1116 Antisense
CTCTTCCACCGACTCGTGGAGCATC 374 229 1181 Antisense
GAGCATCAGTTGGACCAGGTCCTCC 189 389 1199 Antisense
Sequence Source Affymetrix Proprietary Database