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[193735_at] Gonadotropin-releasing hormone receptor like protein

Description B0334.6 /REP_DB=WormBase Gene ID /WP=CE02938 /TR=Q17478 /GB=CAA91374.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Gonadotropin-releasing hormone receptor like protein
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 70      4grp_high_8_8 > 53      6grp_highest_nonorm > 71      6grp_total > 81      4grp_total > 50      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 228
(-1)
P 		443.2
(2.1)
P 		503.5
(3)
P 		94.3
(-3)
A 		409
B 212.5
(-1.6)
P 		514.8
(3)
P 		303.8
(-0.2)
P 		122.9
(-3)
P 		392
C 226.2
(-1)
P 		449.8
(2.9)
P 		453.3
(3)
P 		114.6
(-3)
M 		339
avr 222.2
(-1.1) 		469.3
(3) 		420.2
(2.2) 		110.6
(-3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 260.1
(-1.3)
P 		367.1
(0.2)
P 		301.9
(-0.7)
P 		566.1
(3)
P 		382.3
(0.4)
P 		139.6
(-3)
P 		427
B 213
(-2.5)
P 		369.2
(-0.1)
P 		229
(-2.3)
P 		572.9
(3)
P 		500.5
(1.9)
P 		180
(-3)
P 		393
C 218.7
(-1.5)
P 		372.5
(0.9)
P 		376.8
(1)
P 		502.5
(3)
P 		359.1
(0.7)
P 		126.2
(-3)
P 		376
avr 230.6
(-1.8) 		369.6
(0.3) 		302.6
(-0.7) 		547.2
(3) 		414
(1) 		148.6
(-3) 		399
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 83
(0.5)
P 		96.2
(1.2)
P 		131.6
(3)
P 		13.8
(-3)
A 		118
B 67.8
(-0.5)
P 		127.1
(3)
P 		70.4
(-0.4)
P 		26.2
(-3)
P 		101
C 74.9
(-0.6)
P 		129.3
(1.8)
P 		158
(3)
P 		19.3
(-3)
M 		139
avr 75.2
(0.3) 		117.5
(2.9) 		120
(3) 		19.8
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 48
(-2.2)
P 		130.6
(2.3)
P 		65.8
(-1.3)
P 		143.6
(3)
P 		115.4
(1.5)
P 		34
(-3)
P 		110
B 74.1
(-2.2)
P 		122.9
(-0.3)
P 		55.6
(-3)
P 		151.7
(0.9)
P 		203.3
(3)
P 		67.1
(-2.5)
P 		148
C 81.1
(0.2)
P 		113.7
(2.8)
P 		95.9
(1.4)
P 		101.1
(1.8)
P 		116.2
(3)
P 		42.2
(-3)
P 		74
avr 67.7
(-1.8) 		122.4
(1.6) 		72.4
(-1.5) 		132.1
(2.2) 		145
(3) 		47.8
(-3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3369
Sequence Type Exemplar sequence
Representative Public ID B0334.6 NCBI
Target Description B0334.6 /REP_DB=WormBase Gene ID /WP=CE02938 /TR=Q17478 /GB=CAA91374.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Gonadotropin-releasing hormone receptor like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064058 NCBI Caenorhabditis elegans B0334.6 (B0334.6) mRNA, complete cds. 11/11 None
SNAP00000019020 ENSEMBL cdna:SNAP chromosome:CEL140:II:11510580:11513608:1 11/11 None
GENEFINDER00000019035 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11510580:11513608:1 11/11 None
B0334.6 ENSEMBL cdna:known chromosome:CEL140:II:11510580:11513785:1 gene:B0334.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11510576-11513605(+) 100.0 100.0
Public Domain and Genome References
Gene Title Gonadotropin-releasing hormone receptor like protein
Ensembl B0334.6
Entrez Gene 181927 Entrez gene
SwissProt Q17478 EMBL-EBI
WormBase CE30473 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91374 Hypothetical protein B0334.6 [Caenorhabditis elegans] ref|NP_496459.2| B0334.6 [Caenorhabditis elegans] 0.0
blast CAE59486 Hypothetical protein CBG02871 [Caenorhabditis briggsae] 0.0
blast NP_001002911 G protein-coupled receptor 139 [Homo sapiens] gb|AAT65818.1| G protein-coupled receptor 139 [Homo sapiens] dbj|BAD97440.1| G protein-coupled receptor [Homo sapiens] 1.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496459.2 7 40-62,81-103,123-145,166-188,222-239,283-305,315-337
B0334.6 7 40-62,81-103,123-145,166-188,222-239,283-305,315-337
SNAP00000019020 7 40-62,81-103,123-145,166-188,222-239,283-305,315-337
GENEFINDER00000019035 7 41-63,76-98,102-124,196-213,247-264,308-330,340-362
Sequence
Target Sequence 
>C. ELEGANS:193735_AT
ggactatgtgtctttattcgctttcaatgtcctcccaattattggtcttctctacatgaa
ttctcgaataatcttcactcttcgcagagttgttgatgaagattcaagaaaatacgaaga
aaccaaactttccgatggtttgattcagcatgatgctcataacaaccgaactatgagagc
aaatgcaatgcttttcgcagtcgtcttcatgcttttcttctgtgttggacctcaggctcc
tgcaagaattctgttcgatatgtatggacagtatcatccaaaagccatactttatgtatg
tttgagccaacaactggtattcctgaatgcgtcactcaatttctgtttgtattgtgttgt
gtcaaagagatatcgaacgttgatgaaacagactttgaagaagttcttgcacaaacttga
aggagtcgaccatccattccaaatcaatctgaaacaaacaaagagcagctcggcacatgt
gacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTATGTGTCTTTATTCGCTTTC 22 525 510 Antisense
TGTCCTCCCAATTATTGGTCTTCTC 133 557 537 Antisense
TGGTCTTCTCTACATGAATTCTCGA 135 553 552 Antisense
AATTCTCGAATAATCTTCACTCTTC 134 177 568 Antisense
ATGCAATGCTTTTCGCAGTCGTCTT 454 43 692 Antisense
TCATGCTTTTCTTCTGTGTTGGACC 602 621 716 Antisense
TTGGACCTCAGGCTCCTGCAAGAAT 465 707 734 Antisense
GCCAACAACTGGTATTCCTGAATGC 565 277 815 Antisense
TTCCTGAATGCGTCACTCAATTTCT 50 699 829 Antisense
TGAAGGAGTCGACCATCCATTCCAA 437 575 927 Antisense
AAGAGCAGCTCGGCACATGTGACAT 227 155 970 Antisense
Sequence Source Affymetrix Proprietary Database