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[193734_at] Protein tyrosine phosphatase (non-receptor class)

Description C15H7.3 /REP_DB=WormBase Gene ID /WP=CE00081 /TR=SW:P34337 /GB=CAA80125.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein tyrosine phosphatase (non-receptor class)
Cluster 6grp_total > 88      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 2.9
(-2.6)
A 		2.6
(-3)
A 		4.6
(-0.5)
A 		7.4
(3)
A 		5
B 8.3
(3)
A 		8
(2.7)
A 		3.7
(-2.1)
A 		2.9
(-3)
A 		5
C 3.5
(-2.8)
A 		7.3
(-2.4)
A 		2.1
(-3)
A 		54.2
(3)
A 		52
avr 4.9
(-2.5) 		6
(-2.2) 		3.5
(-3) 		21.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 33.9
(-1.8)
A 		2.6
(-3)
A 		2.5
(-3)
A 		9.6
(-2.7)
A 		76.2
(-0.1)
A 		155.5
(3)
P 		153
B 4.1
(-3)
A 		3.7
(-3)
A 		3.1
(-3)
A 		38.4
(-1.3)
A 		68.8
(0.2)
A 		127.5
(3)
P 		124
C 4.8
(-2.9)
A 		17.2
(-2.4)
A 		1.7
(-3)
A 		3
(-2.9)
A 		67.4
(-0.3)
A 		146.9
(3)
P 		145
avr 14.3
(-2.5) 		7.8
(-2.8) 		2.4
(-3) 		17
(-2.4) 		70.8
(-0.1) 		143.3
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(1)
A 		0.6
(-3)
A 		1.2
(3)
A 		1.1
(2)
A 		1
B 2.7
(3)
A 		2
(1)
A 		0.9
(-2.1)
A 		0.6
(-3)
A 		2
C 1.2
(-2.6)
A 		2.1
(-2)
A 		0.7
(-3)
A 		9.1
(3)
A 		8
avr 1.6
(-1.4) 		1.6
(-1.4) 		0.9
(-3) 		3.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 6.3
(-2.1)
A 		0.9
(-2.9)
A 		0.5
(-3)
A 		2.4
(-2.7)
A 		23
(0.6)
A 		37.9
(3)
P 		37
B 1.4
(-2.9)
A 		1.2
(-2.9)
A 		0.7
(-3)
A 		10.2
(-1.8)
A 		27.9
(0.5)
A 		47.6
(3)
P 		47
C 1.8
(-2.8)
A 		5.2
(-2.4)
A 		0.4
(-3)
A 		0.6
(-3)
A 		21.8
(-0.4)
A 		49.2
(3)
P 		49
avr 3.2
(-2.6) 		2.4
(-2.7) 		0.5
(-3) 		4.4
(-2.5) 		24.2
(0.2) 		44.9
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7851
Sequence Type Exemplar sequence
Representative Public ID C15H7.3 NCBI
Target Description C15H7.3 /REP_DB=WormBase Gene ID /WP=CE00081 /TR=SW:P34337 /GB=CAA80125.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein tyrosine phosphatase (non-receptor class)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066734 NCBI Caenorhabditis elegans C15H7.3 (C15H7.3) mRNA, complete cds. 11/11 A 
SNAP00000039109 ENSEMBL cdna:SNAP chromosome:CEL140:III:9650350:9651659:-1 11/11 None
GENEFINDER00000039116 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9650350:9651659:-1 11/11 None
C15H7.3 ENSEMBL cdna:known chromosome:CEL140:III:9650350:9651659:-1 gene:C15H7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9650345-9651655(-) 94.07 100.0
Public Domain and Genome References
Gene Title Protein tyrosine phosphatase (non-receptor class)
Ensembl C15H7.3
Entrez Gene 182639 Entrez gene
SwissProt P34337 EMBL-EBI
WormBase CE00081 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80125 Hypothetical protein C15H7.3 [Caenorhabditis elegans] ref|NP_499135.1| C15H7.3 [Caenorhabditis elegans] sp|P34337|YK13_CAEEL Hypothetical protein C15H7.3 in chromosome III 1.0E-178
blast CAE71191 Hypothetical protein CBG18048 [Caenorhabditis briggsae] 1.0E-108
blast CAB55152 Hypothetical protein Y116A8C.37 [Caenorhabditis elegans] ref|NP_503038.1| Y116A8C.37 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-46
Sequence
Target Sequence 
>C. ELEGANS:193734_AT
caagttcctgatctgtcaagtgcgcctgacatcgctgatttctggagaatgatccaccag
gagagcatagcttcagtagttattgcagttatgcccctggaggtgacacttcaacaaatc
ttgcctcttctgagcggaacatactccacctatggaaaaatgtttgtcaacaataagaag
gttgaatcagctgtcggaatgactgaatactgtttggaaatctttcccgatggatgctca
aactcgttgctcactacagtgtaccacttgcacaactggcgtcagaaaagaggattggag
gttgtgacagatttggttgcaacgatggagaaggttatgaaggttaatgacaacactgtt
cttatgagcatgaatggtactggtcgagccggaaccatgttaacactcttcacagcaatg
ctccaagttcagaaaggaaaggaagtgaacgcaaaggaaacgttggcaagtttgagagct
gaaagatgcggaattgtggacaacattgatcaattcggaactgtccacagatctatggct
tgttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTTCCTGATCTGTCAAGTGCGC 375 183 595 Antisense
CAAGTGCGCCTGACATCGCTGATTT 442 183 611 Antisense
GACACTTCAACAAATCTTGCCTCTT 407 367 699 Antisense
GGAAATCTTTCCCGATGGATGCTCA 480 527 810 Antisense
GTTGCTCACTACAGTGTACCACTTG 259 439 840 Antisense
AGTGTACCACTTGCACAACTGGCGT 689 59 852 Antisense
GACAACACTGTTCTTATGAGCATGA 34 367 943 Antisense
GTCGAGCCGGAACCATGTTAACACT 610 473 977 Antisense
TAACACTCTTCACAGCAATGCTCCA 644 639 995 Antisense
GATCAATTCGGAACTGTCCACAGAT 150 423 1102 Antisense
GTCCACAGATCTATGGCTTGTTGGT 513 477 1117 Antisense
Sequence Source Affymetrix Proprietary Database