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[193719_s_at]

Description F07A11.2 /REP_DB=WormBase Gene ID /WP=CE03144 /CHR=2 /FEA=Sanger Annotation /DEF=glucosamine-fructose-6-phosphate aminotransferase (HINXTON) TR:Q19130 protein_id:CAA91315.1
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 98      6grp_total > 88      4grp_total > 16      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1286
1 2 3 4 range
A 364.8
(-3)
P 		975.2
(-0.2)
P 		955.2
(-0.2)
P 		1650.5
(3)
P 		1286
B 410
(-3)
P 		782.2
(-1)
P 		730.2
(-1.3)
P 		1544.1
(3)
P 		1134
C 378.7
(-3)
P 		766.5
(-0.8)
P 		921.3
(0.1)
P 		1437.5
(3)
P 		1059
avr 384.5
(-3) 		841.3
(-0.6) 		868.9
(-0.5) 		1544
(3) 		1160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1589
1 2 3 4 5 6 range
A 898.9
(-2)
P 		757.1
(-2.6)
P 		646.8
(-3)
P 		922.7
(-1.9)
P 		1221.3
(-0.8)
P 		2221.3
(3)
P 		1575
B 698.2
(-2.6)
P 		651.1
(-2.9)
P 		631.9
(-3)
P 		795.6
(-2)
P 		1136.5
(0)
P 		1624.6
(3)
P 		993
C 880
(-1.7)
P 		704.5
(-3)
P 		1019.5
(-0.7)
P 		733.7
(-2.8)
P 		1446.6
(2.4)
P 		1528.1
(3)
P 		824
avr 825.7
(-2.3) 		704.2
(-3) 		766.1
(-2.7) 		817.3
(-2.4) 		1268.1
(0.1) 		1791.3
(3) 		1087
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 132.8
(-3)
P 		211.7
(1)
P 		249.7
(3)
P 		241.6
(2.6)
P 		117
B 130.8
(-3)
P 		193.2
(-1.1)
P 		169.2
(-1.8)
P 		329
(3)
P 		198
C 125.4
(-3)
P 		220.4
(-0.1)
P 		321.1
(3)
P 		242.4
(0.6)
P 		196
avr 129.7
(-3) 		208.4
(0.3) 		246.7
(2) 		271
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 165.7
(-2.6)
P 		269.3
(-1.1)
P 		140.8
(-3)
P 		234
(-1.6)
P 		368.5
(0.4)
P 		540.8
(3)
P 		400
B 242.9
(-1.8)
P 		216.7
(-2.2)
P 		153.5
(-3)
P 		210.7
(-2.2)
P 		461.7
(1.1)
P 		605.8
(3)
P 		452
C 326.2
(-0.1)
P 		215
(-1.9)
P 		259.5
(-1.2)
P 		147.6
(-3)
P 		468.1
(2.3)
P 		511.5
(3)
P 		364
avr 244.9
(-2) 		233.7
(-2.2) 		184.6
(-3) 		197.4
(-2.8) 		432.8
(1) 		552.7
(3) 		368
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193719_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3687
Sequence Type Exemplar sequence
Representative Public ID F07A11.2 NCBI
Target Description F07A11.2 /REP_DB=WormBase Gene ID /WP=CE03144 /CHR=2 /FEA=Sanger Annotation /DEF=glucosamine-fructose-6-phosphate aminotransferase (HINXTON) TR:Q19130 protein_id:CAA91315.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064078(11), NM_064079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064078 NCBI Caenorhabditis elegans F07A11.2b (F07A11.2) mRNA, complete cds. 11/11 None
NM_064079 NCBI Caenorhabditis elegans F07A11.2a (F07A11.2) mRNA, complete cds. 11/11 None
SNAP00000044551 ENSEMBL cdna:SNAP chromosome:CEL140:II:11592455:11595285:-1 11/11 None
GENEFINDER00000044559 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11592455:11595285:-1 11/11 None
F07A11.2b.1 ENSEMBL cdna:known chromosome:CEL140:II:11592296:11595311:-1 gene:F07A11.2 11/11 None
F07A11.2b.2 ENSEMBL cdna:known chromosome:CEL140:II:11592363:11595313:-1 gene:F07A11.2 11/11 None
F07A11.2a ENSEMBL cdna:known chromosome:CEL140:II:11592455:11595285:-1 gene:F07A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11592451-11595282(-) 100.0 100.0
Public Domain and Genome References
Ensembl F07A11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42276 Hypothetical protein F07A11.2b [Caenorhabditis elegans] ref|NP_496479.1| F07A11.2b [Caenorhabditis elegans] 0.0
blast CAA91315 Hypothetical protein F07A11.2a [Caenorhabditis elegans] ref|NP_496480.1| F07A11.2a [Caenorhabditis elegans] 0.0
blast CAE59466 Hypothetical protein CBG02850 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000583 EMBL-EBI Glutamine amidotransferase, class-II 2.7E-55
Pfam IPR001347 EMBL-EBI Sugar isomerase (SIS) 1.3E-44
Pfam IPR001347 EMBL-EBI Sugar isomerase (SIS) 3.1E-29
Pfam IPR001347 EMBL-EBI Sugar isomerase (SIS) 1.3E-44
Pfam IPR001347 EMBL-EBI Sugar isomerase (SIS) 3.1E-29
Sequence
Target Sequence 
>C. ELEGANS:193719_S_AT
tatccttgcttatgtttgctctcaccctctccgatgaccgaatctccatggctaagagac
gtgaagagatcattgacgctctcaacgatcttccagaacttatccgcgaagttctccaac
tcgacgagaaagttcttgatatcgccaaacaaatctacaaggagaaatcacttctcatca
tgggaagaggattgaactttgccacatgcctcgaaggagctctcaagatcaaggagcttt
cctacatgcattgcgaaggaatcatgtctggagaactgaagcacggtccacttgccatgg
tcgatgagttcctcagcatctgcatggttgtttgtaacgatcgcgtatacaagaaatcgt
tgaatgcacttcaacaagtcgttgctcgcaaaggagctccaatcatcattgccgactgca
ccgttccagaaggcgatctcgctggaatgaagcatattcttcgtgtaccaaaaactgttg
attgtgtccaaaacattctcacagtcattccactccagctactctcatatcacattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCTTGCTTATGTTTGCTCTCAC 95 659 1589 Antisense
CGATGACCGAATCTCCATGGCTAAG 542 249 1620 Antisense
GATCATTGACGCTCTCAACGATCTT 574 419 1656 Antisense
CAACGATCTTCCAGAACTTATCCGC 464 187 1671 Antisense
GAGCTTTCCTACATGCATTGCGAAG 18 389 1822 Antisense
GAGAACTGAAGCACGGTCCACTTGC 422 391 1859 Antisense
TGCCATGGTCGATGAGTTCCTCAGC 86 583 1881 Antisense
GCACTTCAACAAGTCGTTGCTCGCA 298 317 1954 Antisense
AAAGGAGCTCCAATCATCATTGCCG 630 121 1978 Antisense
ACTGCACCGTTCCAGAAGGCGATCT 518 97 2003 Antisense
TCCAGCTACTCTCATATCACATTGC 66 591 2102 Antisense
Sequence Source Affymetrix Proprietary Database