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[193716_s_at]

Description ZC518.3A /REP_DB=WormBase Gene ID /WP=CE24708 /TR=Q9U1P5 /GB=CAB54511.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase transcription effector like
Cluster 6grp_total > 56      4grp_total > 40      6grp_cgc > 28      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 104.6
(2.7)
M 		61.5
(-2.9)
A 		107
(3)
A 		60.8
(-3)
A 		46
B 63.7
(-3)
A 		92.8
(0.2)
M 		94.7
(0.4)
M 		118
(3)
M 		54
C 91.2
(-3)
A 		123.7
(3)
A 		103.2
(-0.8)
A 		107.4
(-0)
A 		33
avr 86.5
(-3) 		92.7
(-0.5) 		101.6
(3) 		95.4
(0.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 47.2
(0.3)
A 		69.7
(2.4)
A 		50.2
(0.6)
A 		11.2
(-3)
A 		38.5
(-0.5)
A 		76.2
(3)
A 		65
B 10.4
(-3)
A 		75.1
(3)
A 		55.7
(1.2)
A 		66.4
(2.2)
A 		28.4
(-1.3)
A 		66.8
(2.2)
A 		65
C 64
(3)
P 		15.6
(-1.9)
A 		30.7
(-0.4)
A 		4.5
(-3)
A 		44.1
(1)
A 		54.1
(2)
A 		60
avr 40.5
(-0.9) 		53.5
(1.1) 		45.5
(-0.2) 		27.4
(-3) 		37
(-1.5) 		65.7
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 38.1
(3)
M 		13.3
(-2.1)
A 		28
(0.9)
A 		8.9
(-3)
A 		29
B 20.3
(-3)
A 		22.9
(0.2)
M 		21.9
(-1)
M 		25.2
(3)
M 		5
C 30.2
(1.1)
A 		35.6
(2.9)
A 		36
(3)
A 		18.1
(-3)
A 		18
avr 29.5
(3) 		23.9
(0.2) 		28.6
(2.6) 		17.4
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.7
(-1.4)
A 		24.8
(3)
A 		10.9
(-0.8)
A 		2.8
(-3)
A 		11.6
(-0.6)
A 		18.5
(1.3)
A 		22
B 3.6
(-3)
A 		25
(3)
A 		13.5
(-0.2)
A 		17.6
(0.9)
A 		11.5
(-0.8)
A 		24.9
(3)
A 		21
C 23.7
(3)
P 		4.8
(-2)
A 		7.8
(-1.2)
A 		0.9
(-3)
A 		14.3
(0.5)
A 		18.1
(1.5)
A 		23
avr 12
(-0.8) 		18.2
(2) 		10.7
(-1.4) 		7.1
(-3) 		12.5
(-0.6) 		20.5
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193716_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8932
Sequence Type Exemplar sequence
Representative Public ID ZC518.3A NCBI
Target Description ZC518.3A /REP_DB=WormBase Gene ID /WP=CE24708 /TR=Q9U1P5 /GB=CAB54511.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase transcription effector like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028436(11), NM_069954(11), NM_001028437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028436 NCBI Caenorhabditis elegans CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) (ccr-4) mRNA, complete cds. 11/11 None
NM_069954 NCBI Caenorhabditis elegans CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) (ccr-4) mRNA, complete cds. 11/11 A 
NM_001028437 NCBI Caenorhabditis elegans CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) (ccr-4) mRNA, complete cds. 11/11 None
ZC518.3b ENSEMBL cdna:known chromosome:CEL140:IV:12361539:12371817:1 gene:ZC518.3 11/11 None
ZC518.3a ENSEMBL cdna:known chromosome:CEL140:IV:12361997:12370595:1 gene:ZC518.3 11/11 None
ZC518.3c ENSEMBL cdna:known chromosome:CEL140:IV:12362431:12371817:1 gene:ZC518.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029689 4/11 Cross Hyb Matching Probes None
GENEFINDER00000038458 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12363011-12370601(+) 99.24 99.24
Public Domain and Genome References
Ensembl ZC518.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54512 Hypothetical protein ZC518.3b [Caenorhabditis elegans] ref|NP_001023607.1| CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) [Caenorhabditis elegans] 0.0
blast CAB54511 Hypothetical protein ZC518.3a [Caenorhabditis elegans] ref|NP_502355.2| CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) [Caenorhabditis elegans] gb|AAK85706.1| CCR4 [Caenorhabditis elegans] 0.0
blast CAD45610 Hypothetical protein ZC518.3c [Caenorhabditis elegans] ref|NP_001023608.1| CCR (yeast CCR4/NOT complex component) homolog family member (ccr-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0047
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.5E-35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0047
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.5E-35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0047
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0069
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.5E-35
Sequence
Target Sequence 
>C. ELEGANS:193716_S_AT
tatgtggtgatttcaattcccttccggattctggtgtctttgaatatctttccaaaggac
aaataacacgtcgtcatatggatttgaagtcgttccgtgatgattcttgtcttgaaaagt
tcaccaactcgacggacaagaatgtgatcagtcatcccttgaggcttgactcggcttgtg
acattaattcgataccattcacaaactacacattagatttcaaaggaatgattgattaca
ttttcgcaacaccacagtcactcgcgagacttggaatacttggaccatttgacccacagt
gggttcagtcgaataagattcttggattccctcatccacatgtagcatctgatcatattc
caattatggctcaatatgcaatcataccaacaacacatcaacgacagcaaccacttcaac
aggctggtcctgcagctggtgtaattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTGGTGATTTCAATTCCCTTCC 180 655 1877 Antisense
AGTCGTTCCGTGATGATTCTTGTCT 412 61 1964 Antisense
TGATCAGTCATCCCTTGAGGCTTGA 173 565 2021 Antisense
TGAGGCTTGACTCGGCTTGTGACAT 155 567 2036 Antisense
TTACATTTTCGCAACACCACAGTCA 359 683 2112 Antisense
ACCACAGTCACTCGCGAGACTTGGA 60 85 2127 Antisense
ACTTGGACCATTTGACCCACAGTGG 588 101 2154 Antisense
CCCTCATCCACATGTAGCATCTGAT 579 259 2205 Antisense
AACACATCAACGACAGCAACCACTT 668 135 2268 Antisense
GCAACCACTTCAACAGGCTGGTCCT 296 321 2283 Antisense
CTGGTCCTGCAGCTGGTGTAATTGG 527 239 2300 Antisense
Sequence Source Affymetrix Proprietary Database