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[193714_at] human NFX1; D. melanogaster shuttle craft protein

Description C16A3.7 /REP_DB=WormBase Gene ID /WP=CE04007 /TR=Q18034 /GB=AAB47595.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=human NFX1; D. melanogaster shuttle craft protein
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 76      6grp_total > 35      4grp_total > 63      6grp_highest_sub > 02      6grp_cgc > 25      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 898
1 2 3 4 range
A 1373.2
(3)
P 		571.5
(-3)
P 		957.5
(-0.1)
P 		886.2
(-0.6)
P 		802
B 1204.2
(3)
P 		658
(-3)
P 		941.8
(0.1)
P 		1017.2
(0.9)
P 		546
C 1469.3
(3)
P 		656.8
(-3)
P 		1231.6
(1.2)
P 		697.8
(-2.7)
P 		813
avr 1348.9
(3) 		628.8
(-3) 		1043.6
(0.5) 		867.1
(-1) 		720

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 713
1 2 3 4 5 6 range
A 896.2
(-2.8)
P 		1298
(3)
P 		935.1
(-2.2)
P 		1004
(-1.2)
P 		879.8
(-3)
P 		1146.7
(0.8)
P 		418
B 1491.7
(3)
P 		1295.3
(1.1)
P 		1147.7
(-0.2)
P 		1035.6
(-1.3)
P 		856.3
(-3)
P 		969.9
(-1.9)
P 		635
C 1252.8
(3)
P 		1235.2
(2.8)
P 		1205.9
(2.4)
P 		1197.8
(2.3)
P 		778.7
(-3)
P 		1011.6
(-0.1)
P 		474
avr 1213.6
(2.1) 		1276.2
(3) 		1096.2
(0.5) 		1079.1
(0.3) 		838.3
(-3) 		1042.7
(-0.2) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 500
(3)
P 		124.1
(-3)
P 		250.3
(-1)
P 		129.7
(-2.9)
P 		376
B 384
(3)
P 		162.5
(-3)
P 		218.2
(-1.5)
P 		216.8
(-1.5)
P 		222
C 486.4
(3)
P 		188.8
(-1.8)
P 		429.2
(2.1)
P 		117.7
(-3)
P 		369
avr 456.8
(3) 		158.5
(-2.9) 		299.2
(-0.1) 		154.7
(-3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 165.2
(-3)
P 		461.6
(3)
P 		203.7
(-2.2)
P 		254.6
(-1.2)
P 		265.5
(-1)
P 		279.2
(-0.7)
P 		296
B 519
(3)
P 		431.1
(0.8)
P 		278.7
(-2.9)
P 		274.3
(-3)
P 		347.9
(-1.2)
P 		361.7
(-0.9)
P 		245
C 464.3
(3)
P 		376.9
(0.7)
P 		306.9
(-1.2)
P 		240.9
(-3)
P 		252
(-2.7)
P 		338.7
(-0.4)
P 		223
avr 382.8
(1.5) 		423.2
(3) 		263.1
(-2.8) 		256.6
(-3) 		288.5
(-1.9) 		326.5
(-0.5) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7675
Sequence Type Exemplar sequence
Representative Public ID C16A3.7 NCBI
Target Description C16A3.7 /REP_DB=WormBase Gene ID /WP=CE04007 /TR=Q18034 /GB=AAB47595.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=human NFX1; D. melanogaster shuttle craft protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065993(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065993 NCBI Caenorhabditis elegans C16A3.7 (C16A3.7) mRNA, complete cds. 11/11 None
SNAP00000030740 ENSEMBL cdna:SNAP chromosome:CEL140:III:6375328:6378946:1 11/11 None
GENEFINDER00000030795 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6375328:6378946:1 11/11 None
C16A3.7 ENSEMBL cdna:known chromosome:CEL140:III:6375316:6379099:1 gene:C16A3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6375326-6378945(+) 100.0 100.0
Public Domain and Genome References
Gene Title human NFX1; D. melanogaster shuttle craft protein
Ensembl C16A3.7
Entrez Gene 175902 Entrez gene
SwissProt Q18034 EMBL-EBI
WormBase CE04007 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264460_AT NF-X1 type zinc finger family protein at
ATGENOME1:12951_AT NF-X1 type zinc finger family protein at
CANINE:1600414_AT similar to nuclear transcription factor, X-box binding 1 isoform 2 cfa
CANINE_2:CFAAFFX.3681.1.S1_AT similar to nuclear transcription factor, X-box binding 1 isoform 2 cfa
DROSOPHILA_2:1640237_A_AT shuttle craft dm
DROSGENOME1:151662_S_AT shuttle craft dm
CHICKEN:GGAAFFX.23929.1.S1_AT similar to nuclear transcription factor, X-box binding 1 isoform 2; transcriptional repressor NF-X1 gga
HG-U133_PLUS_2:210268_AT nuclear transcription factor, X-box binding 1 hs
HG-U133A:210268_AT nuclear transcription factor, X-box binding 1 hs
HG-U133A_2:210268_AT nuclear transcription factor, X-box binding 1 hs
HG-U133A:202585_S_AT nuclear transcription factor, X-box binding 1 hs
HG-U133_PLUS_2:202585_S_AT nuclear transcription factor, X-box binding 1 hs
HG-U133A_2:202585_S_AT nuclear transcription factor, X-box binding 1 hs
HG-U133A_2:202584_AT nuclear transcription factor, X-box binding 1 hs
HG-FOCUS:202584_AT nuclear transcription factor, X-box binding 1 hs
HG-U133_PLUS_2:202584_AT nuclear transcription factor, X-box binding 1 hs
HG-U133A:202584_AT nuclear transcription factor, X-box binding 1 hs
HU35KSUBC:RC_AA133123_S_AT nuclear transcription factor, X-box binding 1 hs
HU35KSUBD:RC_R55317_AT nuclear transcription factor, X-box binding 1 hs
HUGENEFL:U15306_AT nuclear transcription factor, X-box binding 1 hs
U133_X3P:G4505386_3P_A_AT nuclear transcription factor, X-box binding 1 hs
U133_X3P:HS2.3187.3.A1_3P_S_AT nuclear transcription factor, X-box binding 1 hs
U133_X3P:HS2.3187.2.S1_3P_AT nuclear transcription factor, X-box binding 1 hs
U133_X3P:HS.3187.0.S2_3P_AT nuclear transcription factor, X-box binding 1 hs
HG-U133_PLUS_2:1553103_AT nuclear transcription factor, X-box binding 1 hs
HG-U133_PLUS_2:1553348_A_AT nuclear transcription factor, X-box binding 1 hs
HG-U95AV2:34667_AT nuclear transcription factor, X-box binding 1 hs
HG-U95C:65660_AT nuclear transcription factor, X-box binding 1 hs
HG-U95E:77615_F_AT nuclear transcription factor, X-box binding 1 hs
HG-U95E:77618_AT nuclear transcription factor, X-box binding 1 hs
HG-U95B:43737_AT Nuclear transcription factor, X-box binding 1 hs
HU35KSUBC:RC_AA007594_AT Nuclear transcription factor, X-box binding 1 hs
MG-U74BV2:107352_AT nuclear transcription factor, X-box binding 1 mm
MOE430A:1428248_AT nuclear transcription factor, X-box binding 1 mm
MOUSE430A_2:1428248_AT nuclear transcription factor, X-box binding 1 mm
MOUSE430_2:1428248_AT nuclear transcription factor, X-box binding 1 mm
MOE430A:1419753_AT nuclear transcription factor, X-box binding 1 mm
MOUSE430A_2:1419753_AT nuclear transcription factor, X-box binding 1 mm
MOUSE430_2:1419753_AT nuclear transcription factor, X-box binding 1 mm
MOE430A:1419752_AT nuclear transcription factor, X-box binding 1 mm
MOUSE430A_2:1419752_AT nuclear transcription factor, X-box binding 1 mm
MOUSE430_2:1419752_AT nuclear transcription factor, X-box binding 1 mm
MOE430B:1442397_AT nuclear transcription factor, X-box binding 1 mm
MOUSE430_2:1442397_AT nuclear transcription factor, X-box binding 1 mm
MU19KSUBC:TC38751_AT Nuclear transcription factor, X-box binding 1 (Nfx1), mRNA mm
RG-U34B:RC_AA997289_AT nuclear transcription factor, X-box binding 1 (predicted) rn
RAE230B:1378637_AT nuclear transcription factor, X-box binding 1 (predicted) rn
RAT230_2:1378637_AT nuclear transcription factor, X-box binding 1 (predicted) rn
RAE230B:1382718_AT Nuclear transcription factor, X-box binding 1 (predicted) rn
RAT230_2:1382718_AT Nuclear transcription factor, X-box binding 1 (predicted) rn
RG-U34B:RC_AA900547_AT Nuclear transcription factor, X-box binding 1 (predicted) rn
YEAST_2:1772706_AT Protein that binds to Fpr1p (FKBP12), conferring rapamycin resistance by competing with rapamycin for Fpr1p binding; has similarity to putative transcription factors, including D. melanogaster shuttle craft and human NFX1 Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB47595 Hypothetical protein C16A3.7 [Caenorhabditis elegans] ref|NP_498394.1| C16A3.7 [Caenorhabditis elegans] 0.0
blast CAE72509 Hypothetical protein CBG19688 [Caenorhabditis briggsae] 0.0
blast XP_690559 PREDICTED: similar to nuclear transcription factor, X-box binding 1 isoform 1 [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000967 EMBL-EBI Zn-finger, NF-X1 type 1.0E-6
Pfam IPR000967 EMBL-EBI Zn-finger, NF-X1 type 1.4E-8
Pfam IPR000967 EMBL-EBI Zn-finger, NF-X1 type 6.7E-6
Pfam IPR000967 EMBL-EBI Zn-finger, NF-X1 type 2.8E-7
Pfam IPR000967 EMBL-EBI Zn-finger, NF-X1 type 9.9E-5
Pfam IPR000967 EMBL-EBI Zn-finger, NF-X1 type 1.3E-10
Pfam IPR000967 EMBL-EBI Zn-finger, NF-X1 type 1.6E-4
Pfam IPR001374 EMBL-EBI Single-stranded nucleic acid binding R3H 2.3E-14
Sequence
Target Sequence 
>C. ELEGANS:193714_AT
ccaactttttcaatatcgcctcagaaagtgtagacagtccaccaaaaagaagtatcgttc
tcacagcagtacgaggaaaatctcatcagcctctcgttctcattagtgatcttgtaaact
acaaaggagctctaaagacgccaggacctgctgttattagaaaagatataatggatcaag
ctttgagtaaaaaagaagaaacagaaggtctcatgaaaccattaagatgtacggaaaaaa
tggtagttcggagagaagctcgtccaatgaaggaaataactgccccaatcccattgaaac
aacaaaaccaatttgctcttttggggagcgatgtcgattcggacgatgaagaaagtaacg
ttccgacaacaagtaatttagtatcttcacctccaaaagattggtggaaagacgaggaag
aagggtggcaaaaagtgcaacaaaaagagtatgttgttgaagtcgaacgcgatatgaccg
aagatgagattgaggcggcgaaaaaactggatgaaggtcccacatgggaagatcaatgtg
acgaagatgcaccagcaacagaaaccagttcagctattgaatctccagcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACTTTTTCAATATCGCCTCAGA 685 275 2750 Antisense
AGAAGTATCGTTCTCACAGCAGTAC 130 75 2797 Antisense
GAGGAAAATCTCATCAGCCTCTCGT 702 403 2822 Antisense
CTCTCGTTCTCATTAGTGATCTTGT 134 231 2840 Antisense
AGCTCTAAAGACGCCAGGACCTGCT 671 79 2877 Antisense
AGTTCGGAGAGAAGCTCGTCCAATG 614 63 2994 Antisense
AAGGAAATAACTGCCCCAATCCCAT 235 161 3019 Antisense
TGGGGAGCGATGTCGATTCGGACGA 433 553 3071 Antisense
GTAATTTAGTATCTTCACCTCCAAA 212 463 3122 Antisense
AACTGGATGAAGGTCCCACATGGGA 576 141 3254 Antisense
GTTCAGCTATTGAATCTCCAGCGAA 318 445 3317 Antisense
Sequence Source Affymetrix Proprietary Database