[Home] | [Total List]

[193707_s_at] ATP binding transport protein (White protein)

Description C16C10.12 /REP_DB=WormBase Gene ID /WP=CE01492 /TR=SW:Q09466 /GB=CAA86750.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATP binding transport protein (White protein)
Cluster 6grp_total > 95      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 23.3
(-3)
A 		30.9
(-1.3)
A 		42.9
(1.5)
A 		49.6
(3)
A 		26
B 34.2
(-3)
P 		52.3
(3)
P 		41.8
(-0.5)
A 		49
(1.9)
A 		18
C 48.2
(3)
P 		21.2
(-3)
A 		36.5
(0.4)
A 		41.7
(1.6)
A 		27
avr 35.2
(-2.8) 		34.8
(-3) 		40.4
(-0.2) 		46.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 57.3
(2.1)
P 		40.4
(0.3)
A 		9.7
(-3)
A 		64.1
(2.8)
A 		61.8
(2.6)
P 		65.8
(3)
P 		56
B 31.1
(-3)
M 		32.8
(-2.8)
A 		42.8
(-1.4)
P 		63.4
(1.4)
P 		64.8
(1.6)
P 		75.2
(3)
P 		44
C 41.2
(1.8)
P 		27.5
(-3)
A 		44.8
(3)
A 		40
(1.3)
A 		35.1
(-0.4)
A 		37.5
(0.5)
A 		17
avr 43.2
(-0.6) 		33.6
(-2.7) 		32.4
(-3) 		55.8
(2.2) 		53.9
(1.8) 		59.5
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.5
(-0.6)
A 		6.7
(-3)
A 		11.2
(3)
A 		7.3
(-2.2)
A 		5
B 10.9
(-0.7)
P 		12.9
(3)
P 		9.7
(-3)
A 		10.4
(-1.7)
A 		3
C 16
(3)
P 		6.1
(-3)
A 		12.7
(1)
A 		7
(-2.5)
A 		10
avr 11.8
(3) 		8.6
(-2.3) 		11.2
(2) 		8.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 10.6
(0.1)
P 		14.4
(1.5)
A 		2.1
(-3)
A 		16.3
(2.2)
A 		18.6
(3)
P 		16
(2.1)
P 		17
B 10.8
(-2.9)
M 		10.9
(-2.8)
A 		10.4
(-3)
P 		16.8
(-0.8)
P 		26.3
(2.4)
P 		28.1
(3)
P 		18
C 15.3
(3)
P 		8.4
(-2.7)
A 		11.4
(-0.2)
A 		8
(-3)
A 		11.4
(-0.2)
A 		12.5
(0.7)
A 		7
avr 12.2
(-0.7) 		11.2
(-1.2) 		8
(-3) 		13.7
(0.1) 		18.8
(2.9) 		18.9
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193707_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7412
Sequence Type Exemplar sequence
Representative Public ID C16C10.12 NCBI
Target Description C16C10.12 /REP_DB=WormBase Gene ID /WP=CE01492 /TR=SW:Q09466 /GB=CAA86750.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATP binding transport protein (White protein)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065424 NCBI Caenorhabditis elegans C16C10.12 (C16C10.12) mRNA, complete cds. 11/11 None
SNAP00000043766 ENSEMBL cdna:SNAP chromosome:CEL140:III:4147425:4150863:-1 11/11 None
GENEFINDER00000043788 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4147425:4151510:-1 11/11 None
C16C10.12 ENSEMBL cdna:known chromosome:CEL140:III:4147425:4151510:-1 gene:C16C10.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4147424-4151510(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP binding transport protein (White protein)
Ensembl C16C10.12
Entrez Gene 175528 Entrez gene
SwissProt Q09466 EMBL-EBI
WormBase CE01492 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250239_AT ABC transporter family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86750 Hypothetical protein C16C10.12 [Caenorhabditis elegans] ref|NP_497825.1| C16C10.12 [Caenorhabditis elegans] sp|Q09466|YQ5C_CAEEL Putative ABC transporter C16C10.12 in chromosome III 0.0
blast CAE72870 Hypothetical protein CBG20172 [Caenorhabditis briggsae] 0.0
blast CAE72870 Hypothetical protein CBG20172 [Caenorhabditis briggsae] 1.0E-171
blast AAC77504 Hypothetical protein T26A5.1 [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 7.0E-32
Pfam IPR003439 EMBL-EBI ABC transporter 6.8E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497825.1 6 364-381,394-416,442-464,476-498,503-525,584-606
C16C10.12 6 364-381,394-416,442-464,476-498,503-525,584-606
SNAP00000043766 6 235-252,265-287,313-335,347-369,374-396,455-477
GENEFINDER00000043788 6 364-381,394-416,442-464,476-498,503-525,584-606
Sequence
Target Sequence 
>C. ELEGANS:193707_S_AT
gctcactttctccacgatgtttggaattatgacatttatggaacatgaacttccattaat
tgcgagagaatatcatgatggattgttttatgtaattagttattatatttcgagatttct
gtcatatctcccattatttacaatcgacggagctctaatgattgtaatatcatattggat
gattggattgaatagtacttggcaacaagtggctaaaagtattctaatttctgtgctcgt
cgagcagtctgccacttcgtgtggcctcttcttggcttgtctattcgagactacttcgct
ggcaattgcttttgccgttccagcatcaggcctttttgcactgttgagtggattatatgg
aaatacgaataactttccagtttacattcggtggatgcaatggactagttggtgtagata
tggattcgaaggactcgtcgtgaatcagtggtctcaagtggacaatccgaaatgggatcc
tttctatcgagaattgattctgaaacagttctcattcaacaaagacaactatcaattgga
tgttattggactctgctcaattgtgatctttttctatttggctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCACTTTCTCCACGATGTTTGGA 671 301 1221 Antisense
GTCATATCTCCCATTATTTACAATC 559 467 1341 Antisense
GTATTCTAATTTCTGTGCTCGTCGA 247 453 1439 Antisense
CCTCTTCTTGGCTTGTCTATTCGAG 605 267 1485 Antisense
GAGACTACTTCGCTGGCAATTGCTT 634 393 1507 Antisense
TGGCAATTGCTTTTGCCGTTCCAGC 190 547 1520 Antisense
GCATCAGGCCTTTTTGCACTGTTGA 571 307 1543 Antisense
GGACTCGTCGTGAATCAGTGGTCTC 672 523 1651 Antisense
ATTGGATGTTATTGGACTCTGCTCA 692 3 1755 Antisense
GGACTCTGCTCAATTGTGATCTTTT 226 525 1768 Antisense
TTGTGATCTTTTTCTATTTGGCTGG 163 707 1781 Antisense
Sequence Source Affymetrix Proprietary Database