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[193705_s_at] Kunitz/Bovine pancreatic trypsin inhibitor domain

Description Y43F8B.3 /REP_DB=WormBase Gene ID /WP=CE21888 /TR=Q9XWX5 /GB=CAA21511.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain
Cluster 6grp_total > 01      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 24.5
(-0.4)
A 		49.3
(2.6)
A 		3.8
(-3)
A 		52.4
(3)
A 		49
B 3.4
(1.9)
A 		3.7
(2.7)
A 		3.8
(3)
A 		1.7
(-3)
A 		2
C 4.6
(-3)
A 		6.5
(-2.7)
A 		10
(-2.1)
A 		41.3
(3)
A 		37
avr 10.8
(-1.9) 		19.8
(0.2) 		5.9
(-3) 		31.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6.1
(-2.4)
A 		37.9
(3)
A 		2.5
(-3)
A 		7.4
(-2.2)
A 		4.7
(-2.6)
A 		5.2
(-2.5)
A 		35
B 5.3
(-2.4)
A 		35.7
(3)
A 		20.1
(0.2)
A 		2.1
(-3)
A 		5.4
(-2.4)
A 		6.1
(-2.3)
A 		34
C 4.9
(-2)
A 		13.4
(0.6)
A 		3.8
(-2.4)
A 		2
(-2.9)
A 		1.8
(-3)
A 		21.3
(3)
A 		20
avr 5.4
(-2.6) 		29
(3) 		8.8
(-1.8) 		3.8
(-3) 		4
(-3) 		10.9
(-1.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.9
(1.9)
A 		10.7
(3)
A 		1
(-3)
A 		7.7
(1.1)
A 		10
B 1.1
(3)
A 		0.9
(1.3)
A 		0.9
(1.3)
A 		0.4
(-3)
A 		1
C 1.5
(-3)
A 		1.9
(-2.6)
A 		3.5
(-0.8)
A 		7
(3)
A 		6
avr 3.8
(0.8) 		4.5
(2.1) 		1.8
(-3) 		5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		13.5
(3)
A 		0.6
(-3)
A 		1.9
(-2.4)
A 		1.4
(-2.6)
A 		1.3
(-2.7)
A 		13
B 1.9
(-2.3)
A 		11.9
(3)
A 		4.9
(-0.7)
A 		0.6
(-3)
A 		2.2
(-2.2)
A 		2.3
(-2.1)
A 		11
C 1.8
(-1.7)
A 		4.1
(0.3)
A 		1
(-2.5)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		7.1
(3)
A 		7
avr 1.6
(-2.6) 		9.8
(3) 		2.2
(-2.2) 		1
(-3) 		1.4
(-2.7) 		3.6
(-1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193705_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14474
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.3 NCBI
Target Description Y43F8B.3 /REP_DB=WormBase Gene ID /WP=CE21888 /TR=Q9XWX5 /GB=CAA21511.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075393 NCBI Caenorhabditis elegans Y43F8B.3 (Y43F8B.3) mRNA, complete cds. 11/11 None
SNAP00000027182 ENSEMBL cdna:SNAP chromosome:CEL140:V:19515142:19521090:1 11/11 None
GENEFINDER00000027199 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19516514:19522298:1 10/11 None
Y43F8B.3 ENSEMBL cdna:known chromosome:CEL140:V:19505684:19522522:1 gene:Y43F8B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19505683-19522298(+) 98.62 100.0
Public Domain and Genome References
Gene Title Kunitz/Bovine pancreatic trypsin inhibitor domain
Ensembl Y43F8B.3
Entrez Gene 180277 Entrez gene
SwissProt Q9XWX5 EMBL-EBI
WormBase CE21888 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21511 Hypothetical protein Y43F8B.3 [Caenorhabditis elegans] ref|NP_507794.1| Y43F8B.3 [Caenorhabditis elegans] 0.0
blast CAE61720 Hypothetical protein CBG05670 [Caenorhabditis briggsae] 0.0
blast CAE70687 Hypothetical protein CBG17404 [Caenorhabditis briggsae] 1.0E-172
blast CAE70687 Hypothetical protein CBG17404 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 8.5E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.4E-13
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.8E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-20
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 6.4E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 8.8E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.4E-23
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.0E-12
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.6E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.8E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.7E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.7E-15
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.1E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.2E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.7E-23
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.6E-15
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.8E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.6E-9
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.1E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.2E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.7E-23
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.6E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.8E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 8.7E-27
Sequence
Target Sequence 
>C. ELEGANS:193705_S_AT
acgtcagatctaccgtatgctgcgcgcgacgtggcaactcttgtgatcagcagctcatgc
tcggcgtcggtgacgctgcgatcgatcggtactactacgacactacagacgacgcgtgca
tggcgttcaactacaccggcgtcggcgggaatgagaataactttttgacgaaggcagagt
gtcagattgcgtgccccgggtaccgggggtactgtcctcacgggaagcctgatgtgacgg
accactcgctgacgacgtgcgggattgatactggttgcccgagggatcatgtctgccacg
tcagcaagcggggatcgaagaccgtgtgctgtccggatccggcatccttctgcctggtcc
gagccgatccgggcccttgcaatcgagaaatcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTCAGATCTACCGTATGCTGCGC 41 95 4661 Antisense
TGGCAACTCTTGTGATCAGCAGCTC 240 547 4692 Antisense
TCGGTGACGCTGCGATCGATCGGTA 635 605 4727 Antisense
GATCGGTACTACTACGACACTACAG 582 417 4744 Antisense
GACACTACAGACGACGCGTGCATGG 354 367 4759 Antisense
CTACACCGGCGTCGGCGGGAATGAG 551 225 4791 Antisense
GGAAGCCTGATGTGACGGACCACTC 144 531 4883 Antisense
CACTCGCTGACGACGTGCGGGATTG 193 195 4903 Antisense
GATTGATACTGGTTGCCCGAGGGAT 472 433 4923 Antisense
TCGAAGACCGTGTGCTGTCCGGATC 669 599 4975 Antisense
GGGCCCTTGCAATCGAGAAATCCCC 598 491 5031 Antisense
Sequence Source Affymetrix Proprietary Database