[Home] | [Total List]

[193695_at] Kunitz/Bovine pancreatic trypsin inhibitor domain

Description W05B2.2 /REP_DB=WormBase Gene ID /WP=CE20145 /TR=Q9U350 /GB=CAB63320.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain
Cluster 6grp_total > 70      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 21.7
(-3)
A 		82.2
(3)
A 		27.4
(-2.4)
A 		21.3
(-3)
A 		61
B 7.6
(-2.5)
A 		61.3
(3)
A 		2.7
(-3)
A 		41.1
(0.9)
A 		59
C 49.9
(0.8)
A 		15.4
(-2.3)
A 		8
(-3)
A 		74.8
(3)
A 		67
avr 26.4
(-1) 		53
(3) 		12.7
(-3) 		45.7
(1.9) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 19.8
(0.3)
A 		6.6
(-3)
A 		7.4
(-2.8)
A 		27.5
(2.2)
A 		8.1
(-2.6)
A 		30.9
(3)
A 		24
B 2.3
(-3)
A 		20.6
(3)
A 		4.9
(-2.1)
A 		18.7
(2.4)
A 		15.1
(1.2)
A 		8.3
(-1)
A 		18
C 13.2
(-1.8)
A 		20.1
(-0.9)
A 		47.8
(3)
A 		27.4
(0.1)
A 		18.3
(-1.1)
A 		4.9
(-3)
A 		43
avr 11.8
(-3) 		15.8
(-1.1) 		20
(0.9) 		24.5
(3) 		13.8
(-2.1) 		14.7
(-1.6) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.9
(-1)
A 		17.8
(3)
A 		7.2
(-1.3)
A 		3.1
(-3)
A 		15
B 2.4
(-2.3)
A 		15.1
(3)
A 		0.6
(-3)
A 		8.7
(0.4)
A 		15
C 16.5
(3)
A 		4.4
(-2.3)
A 		2.8
(-3)
A 		12.6
(1.3)
A 		14
avr 8.9
(0.6) 		12.4
(3) 		3.5
(-3) 		8.1
(0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.7
(-0.9)
A 		2.3
(-2.3)
A 		1.6
(-3)
A 		7
(2.5)
A 		2.4
(-2.2)
A 		7.5
(3)
A 		6
B 0.8
(-3)
A 		6.9
(3)
A 		1.2
(-2.6)
A 		5
(1.1)
A 		6.1
(2.2)
A 		3.1
(-0.7)
A 		6
C 4.9
(-1.1)
A 		6.1
(-0.5)
A 		12.2
(3)
A 		5.5
(-0.8)
A 		5.9
(-0.6)
A 		1.6
(-3)
A 		11
avr 3.1
(-3) 		5.1
(1.4) 		5
(1.2) 		5.8
(3) 		4.8
(0.8) 		4.1
(-0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6302
Sequence Type Exemplar sequence
Representative Public ID W05B2.2 NCBI
Target Description W05B2.2 /REP_DB=WormBase Gene ID /WP=CE20145 /TR=Q9U350 /GB=CAB63320.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067005 NCBI Caenorhabditis elegans W05B2.2 (W05B2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000036396 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10954797:10966673:-1 11/11 None
SNAP00000036385 ENSEMBL cdna:SNAP chromosome:CEL140:III:10960170:10966673:-1 9/11 None
W05B2.2 ENSEMBL cdna:known chromosome:CEL140:III:10960170:10966873:-1 gene:W05B2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10960478-10966669(-) 100.0 100.0
Public Domain and Genome References
Gene Title Kunitz/Bovine pancreatic trypsin inhibitor domain
Ensembl W05B2.2
Entrez Gene 189208 Entrez gene
SwissProt Q9U350 EMBL-EBI
WormBase CE37997 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63320 Hypothetical protein W05B2.2 [Caenorhabditis elegans] ref|NP_499406.2| W05B2.2 [Caenorhabditis elegans] 0.0
blast CAE71366 Hypothetical protein CBG18270 [Caenorhabditis briggsae] 0.0
blast CAA79570 Hypothetical protein ZC84.6 [Caenorhabditis elegans] ref|NP_499035.1| ZC84.6 [Caenorhabditis elegans] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.8E-30
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 9.6E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.5E-19
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-12
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-4
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.7E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-5
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 8.2E-19
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 9.6E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.5E-19
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-12
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-4
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.7E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-5
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.8E-30
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 9.6E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.5E-19
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-12
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-4
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.7E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000036396 1 1250-1272
Sequence
Target Sequence 
>C. ELEGANS:193695_AT
gtacttaaatcctctggaccatccacaaatgtgcattaccagcttgaagtcgtgctccga
ctcggagacctgtctgaaaaccacgagtggcgggaattttgtgtgttgtcagcatccgcc
ttctttccagaccctcatgaacaacttgtgcggcgccaactatcagccgacactgaacaa
gtcggggaaccccattagatgctcgtcgagcagccgatgtgctagtaggatatgcaggca
gagtccggtgctgagatatagtatttgttgtcagaggagaacgccaaaaacacgtctctt
aatccgtccgctgtctgagggtcagattaggaagccgatttgtaggtcggaagccgagtc
aaacatgggctcctgccttccaaaactttttgcgggtgagaccggttgtgaggctgacga
gcaatgtggggctccggcaacttgtatggagcaacgatgtgcatgtcctaaaggcaccgt
gcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTTAAATCCTCTGGACCATCCA 429 457 3309 Antisense
TACCAGCTTGAAGTCGTGCTCCGAC 585 649 3345 Antisense
GGAGACCTGTCTGAAAACCACGAGT 81 519 3372 Antisense
AATTTTGTGTGTTGTCAGCATCCGC 616 175 3403 Antisense
TTCTTTCCAGACCCTCATGAACAAC 271 691 3429 Antisense
ACAACTTGTGCGGCGCCAACTATCA 628 111 3449 Antisense
GTCGGGGAACCCCATTAGATGCTCG 195 473 3489 Antisense
CTCGTCGAGCAGCCGATGTGCTAGT 347 233 3510 Antisense
ATGCAGGCAGAGTCCGGTGCTGAGA 659 43 3540 Antisense
GGGTGAGACCGGTTGTGAGGCTGAC 437 497 3702 Antisense
GCATGTCCTAAAGGCACCGTGCAGT 364 309 3769 Antisense
Sequence Source Affymetrix Proprietary Database