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[193693_s_at] homeobox protein (NK-2 subfamily)

Description F29F11.5 /REP_DB=WormBase Gene ID /WP=CE05771 /GEN=ceh-22 /TR=SW:P41936 /GB=CAA98272.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=homeobox protein (NK-2 subfamily)
Cluster 6grp_total > 12      4grp_total > 23      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 252.4
(3)
P 		112
(-3)
A 		157.6
(-1.1)
A 		225.1
(1.8)
P 		140
B 226.7
(3)
P 		132.9
(-0.2)
A 		52.5
(-3)
A 		145.8
(0.2)
P 		174
C 257.6
(3)
P 		73
(-3)
A 		91.6
(-2.4)
A 		188.4
(0.8)
P 		185
avr 245.6
(3) 		106
(-2.8) 		100.6
(-3) 		186.4
(0.6) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 119.6
(-1)
P 		178.1
(3)
P 		103
(-2.2)
P 		114.4
(-1.4)
P 		101.6
(-2.3)
A 		90.8
(-3)
P 		87
B 156.5
(-0.3)
P 		208.5
(3)
P 		115.2
(-2.9)
P 		123.6
(-2.4)
P 		114.4
(-3)
A 		114.2
(-3)
P 		94
C 131.4
(-1)
P 		199.2
(3)
P 		187.8
(2.3)
P 		155.6
(0.4)
P 		105.6
(-2.6)
A 		98.3
(-3)
P 		101
avr 135.8
(-0.8) 		195.3
(3) 		135.3
(-0.8) 		131.2
(-1.1) 		107.2
(-2.6) 		101.1
(-3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 91.9
(3)
P 		24.3
(-3)
A 		41.2
(-1.5)
A 		33
(-2.2)
P 		68
B 72.3
(3)
P 		32.8
(-0.9)
A 		12.2
(-3)
A 		31.1
(-1.1)
P 		60
C 85.3
(3)
P 		21
(-3)
A 		31.9
(-2)
A 		31.8
(-2)
P 		64
avr 83.2
(3) 		26
(-3) 		28.4
(-2.7) 		32
(-2.4) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 22
(-3)
P 		63.3
(3)
P 		22.4
(-2.9)
P 		29
(-2)
P 		30.7
(-1.7)
A 		22.1
(-3)
P 		41
B 54.4
(0.8)
P 		69.4
(3)
P 		28
(-3)
P 		32.7
(-2.3)
P 		46.5
(-0.3)
A 		42.6
(-0.9)
P 		41
C 48.7
(0.5)
P 		60.8
(3)
P 		47.8
(0.4)
P 		31.3
(-3)
P 		34.2
(-2.4)
A 		32.9
(-2.7)
P 		30
avr 41.7
(-1.1) 		64.5
(3) 		32.7
(-2.7) 		31
(-3) 		37.1
(-1.9) 		32.5
(-2.7) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193693_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13818
Sequence Type Exemplar sequence
Representative Public ID F29F11.5 NCBI
Target Description F29F11.5 /REP_DB=WormBase Gene ID /WP=CE05771 /GEN=ceh-22 /TR=SW:P41936 /GB=CAA98272.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=homeobox protein (NK-2 subfamily)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073331 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-22) (ceh-22) mRNA, complete cds. 11/11 A 
SNAP00000022015 ENSEMBL cdna:SNAP chromosome:CEL140:V:10676895:10677976:1 11/11 None
GENEFINDER00000022017 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10674780:10677976:1 11/11 None
F29F11.5 ENSEMBL cdna:known chromosome:CEL140:V:10675043:10678228:1 gene:F29F11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10675217-10677976(+) 100.0 100.0
Public Domain and Genome References
Gene Title homeobox protein (NK-2 subfamily)
Gene Symbol ceh-22
Ensembl F29F11.5
Entrez Gene 179485 Entrez gene
SwissProt P41936 EMBL-EBI
WormBase CE05771 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98272 Hypothetical protein F29F11.5 [Caenorhabditis elegans] ref|NP_505732.3| C.Elegans Homeobox family member (ceh-22) [Caenorhabditis elegans] 1.0E-148
blast P41936 Homeobox protein ceh-22 gb|AAA20841.1| CEH-22 homeoprotein gb|AAA20840.1| CEH-22 homeoprotein 1.0E-148
blast CAE64871 Hypothetical protein CBG09671 [Caenorhabditis briggsae] 1.0E-113
blast CAA98272 Hypothetical protein F29F11.5 [Caenorhabditis elegans] ref|NP_505732.3| C.Elegans Homeobox family member (ceh-22) [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 9.99999999819959E-24
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.99999999909979E-24
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.00000001954148E-24
Pfam IPR001356 EMBL-EBI Homeobox 6.3E-26
Pfam IPR001356 EMBL-EBI Homeobox 6.3E-26
Pfam IPR001356 EMBL-EBI Homeobox 6.3E-26
Sequence
Target Sequence 
>C. ELEGANS:193693_S_AT
agaaagcgtcgcgttttgttcacaaaagcacaaacttatgaacttgaacgacgattccgc
tcgcaaaaatatctgagcgcgcctgaacgtgaagctcttgcaatgcaaattcgacttact
ccgactcaagtaaaaatttggttccaaaatcatcgatacaaaacaaaaaaaagtcatacg
gataagccaataaacgcggcgcttcttaccacaatgcccaatgcattttcaagtcaatcg
acagcggccagttttccaacaagagcaatgccgataccaatgctagtccgtgactcttct
gctcgttcttcggacatttcctcaacatctccatacacggtagcatttggaagtgccaat
tcaggatacctaccaacaccttccgcctacctcccagccacttccgggtatttttcaaac
ggaccttcagcagcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAAGCGTCGCGTTTTGTTCACAA 137 73 580 Antisense
GAACTTGAACGACGATTCCGCTCGC 316 347 619 Antisense
TATCTGAGCGCGCCTGAACGTGAAG 392 657 649 Antisense
GCAAATTCGACTTACTCCGACTCAA 268 317 684 Antisense
CAATAAACGCGGCGCTTCTTACCAC 10 181 767 Antisense
AAGTCAATCGACAGCGGCCAGTTTT 214 151 810 Antisense
TGCCGATACCAATGCTAGTCCGTGA 63 585 848 Antisense
TCGTTCTTCGGACATTTCCTCAACA 179 603 882 Antisense
CCTCAACATCTCCATACACGGTAGC 570 267 899 Antisense
ATTCAGGATACCTACCAACACCTTC 30 13 938 Antisense
TTCAAACGGACCTTCAGCAGCTTCT 569 683 993 Antisense
Sequence Source Affymetrix Proprietary Database