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[193690_at]

Description F35G2.1 /REP_DB=WormBase Gene ID /WP=CE05808 /CHR=4 /FEA=Sanger Annotation /DEF=protein disulphide isomerase-related protein like (HINXTON) TR:Q20063 protein_id:CAA93467.1
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 92      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 64      6grp_total > 94      4grp_total > 38      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 803
1 2 3 4 range
A 1172
(3)
P 		540.4
(-2.8)
P 		519
(-3)
P 		639.5
(-1.9)
P 		653
B 1008.2
(3)
P 		508.5
(-1.8)
P 		381.2
(-3)
P 		736.1
(0.4)
P 		627
C 1184.6
(3)
P 		649.7
(-1.2)
P 		413.7
(-3)
P 		616.4
(-1.4)
P 		771
avr 1121.6
(3) 		566.2
(-1.9) 		438
(-3) 		664
(-1) 		684

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1053
1 2 3 4 5 6 range
A 456.1
(-2.5)
P 		924.2
(1)
P 		390.7
(-3)
P 		1153.9
(2.7)
P 		1167.3
(2.8)
P 		1196.6
(3)
P 		806
B 672.8
(-0.6)
P 		576.1
(-1.9)
P 		489.1
(-3)
P 		905.6
(2.3)
P 		958
(3)
P 		781.1
(0.7)
P 		469
C 1034.6
(0)
P 		622.2
(-3)
P 		721.3
(-2.3)
P 		1171.8
(1)
P 		1443.9
(3)
P 		794.2
(-1.7)
P 		822
avr 721.2
(-1.3) 		707.5
(-1.4) 		533.7
(-3) 		1077.1
(2) 		1189.7
(3) 		924
(0.6) 		656
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 338
1 2 3 4 range
A 426.7
(3)
P 		117.3
(-2.6)
P 		135.7
(-2.2)
P 		93.6
(-3)
P 		333
B 321.5
(3)
P 		125.6
(-2)
P 		88.3
(-3)
P 		156.9
(-1.2)
P 		233
C 392.1
(3)
P 		186.8
(-1.3)
P 		144.2
(-2.2)
P 		103.9
(-3)
P 		288
avr 380.1
(3) 		143.2
(-2.4) 		122.7
(-2.9) 		118.1
(-3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 84.1
(-3)
P 		328.7
(2.5)
P 		85.1
(-3)
P 		292.6
(1.7)
P 		352.2
(3)
P 		291.3
(1.6)
P 		268
B 234.1
(-0.4)
P 		191.8
(-1.4)
P 		118.8
(-3)
P 		239.9
(-0.3)
P 		389.2
(3)
P 		291.3
(0.8)
P 		270
C 383.5
(1.2)
P 		189.8
(-2.9)
P 		183.6
(-3)
P 		235.7
(-1.9)
P 		467.2
(3)
P 		265.9
(-1.3)
P 		284
avr 233.9
(-0.7) 		236.8
(-0.6) 		129.2
(-3) 		256.1
(-0.2) 		402.9
(3) 		282.8
(0.4) 		274
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9690
Sequence Type Exemplar sequence
Representative Public ID F35G2.1 NCBI
Target Description F35G2.1 /REP_DB=WormBase Gene ID /WP=CE05808 /CHR=4 /FEA=Sanger Annotation /DEF=protein disulphide isomerase-related protein like (HINXTON) TR:Q20063 protein_id:CAA93467.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069913 NCBI Caenorhabditis elegans F35G2.1a (F35G2.1) mRNA, complete cds. 11/11 None
SNAP00000015552 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12205118:12207206:1 11/11 None
GENEFINDER00000015559 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12203221:12207206:1 11/11 None
F35G2.1a.2 ENSEMBL cdna:known chromosome:CEL140:IV:12200949:12207206:1 gene:F35G2.1 11/11 A 
F35G2.1a.1 ENSEMBL cdna:known chromosome:CEL140:IV:12203220:12207951:1 gene:F35G2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12203226-12207212(+) 100.0 100.0
Public Domain and Genome References
Ensembl F35G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93467 Hypothetical protein F35G2.1a [Caenorhabditis elegans] ref|NP_502314.1| F35G2.1a [Caenorhabditis elegans] 0.0
blast CAE62199 Hypothetical protein CBG06249 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006863 EMBL-EBI Erv1/Alr 2.6E-7
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 5.2E-11
Pfam IPR006863 EMBL-EBI Erv1/Alr 2.6E-7
Sequence
Target Sequence 
>C. ELEGANS:193690_AT
gagctcgtcttgtgttcacacacatgcgcgaattcctcgaaggtcgcaaatcaattggtt
ctgtctcatctgatgaatatcgtcgacaattcgaaagtgtggaacgtgtctacgccagcc
cattcccagtcaattcgacatggcaacactgtaaaggatcatctccaatgtatcgtggat
acacatgtggtctatggacaacgttccacgctcttactgttcacacatatattgatacaa
tcaaagatgactatgtgaatccaatgaaaccactgagcacaattcagggatgggtgaaga
gctatttcggatgtgaacactgtcgtaatcatttcatgcatatgacgacgacactgttcc
cattgaatgaacgacgagttcgtcatccacacgatatgatgacgtatctctggagagctc
ataatattgtcaacaatcggttgcatggtgactcgacagaagatccacaattcacgaaaa
tgcagttcccagcacctttcttatgtccaacgtgtcattctggaggacagttttcgcggc
ggcagataaggaacttcctactccgctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCGTCTTGTGTTCACACACAT 627 387 1196 Antisense
ACATGCGCGAATTCCTCGAAGGTCG 202 107 1217 Antisense
CAATTGGTTCTGTCTCATCTGATGA 681 179 1247 Antisense
AAGTGTGGAACGTGTCTACGCCAGC 475 159 1290 Antisense
GGTCTATGGACAACGTTCCACGCTC 671 501 1384 Antisense
CACGCTCTTACTGTTCACACATATA 664 199 1402 Antisense
ATATGACGACGACACTGTTCCCATT 625 21 1535 Antisense
ACGAGTTCGTCATCCACACGATATG 542 93 1569 Antisense
GCACCTTTCTTATGTCCAACGTGTC 160 315 1687 Antisense
GGACAGTTTTCGCGGCGGCAGATAA 318 517 1720 Antisense
GATAAGGAACTTCCTACTCCGCTAT 346 417 1740 Antisense
Sequence Source Affymetrix Proprietary Database