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[193686_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar).

Description F32A11.6 /REP_DB=WormBase Gene ID /WP=CE18657 /TR=Q9XV46 /GB=CAB04229.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Cluster 6grp_total > 85      4grp_total > 09      6grp_cgc > 78      6grp_cgc_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1334
1 2 3 4 range
A 93.4
(-3)
A 		367
(-1.7)
A 		360.5
(-1.7)
A 		1344.6
(3)
P 		1251
B 89.4
(-3)
A 		236.8
(-2.3)
A 		290.8
(-2.1)
A 		1423.3
(3)
P 		1334
C 96.2
(-3)
A 		329.6
(-1.7)
A 		318.3
(-1.8)
A 		1206.3
(3)
P 		1110
avr 93
(-3) 		311.1
(-1.9) 		323.2
(-1.9) 		1324.7
(3) 		1232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 95.6
(-3)
A 		211.5
(1)
A 		177.2
(-0.2)
A 		168.6
(-0.5)
A 		271.2
(3)
A 		263.7
(2.7)
P 		176
B 149.7
(-3)
A 		224.9
(1.6)
A 		201
(0.1)
A 		248.6
(3)
A 		248.2
(3)
A 		237.7
(2.3)
A 		99
C 114
(-3)
A 		237.4
(0.8)
A 		145.7
(-2)
A 		248.2
(1.2)
A 		213.8
(0.1)
P 		307.5
(3)
P 		194
avr 119.8
(-3) 		224.6
(1.2) 		174.6
(-0.8) 		221.8
(1.1) 		244.4
(2) 		269.6
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 34
(-3)
A 		79.7
(-1.3)
A 		94.2
(-0.8)
A 		196.8
(3)
P 		163
B 28.5
(-3)
A 		58.5
(-2.3)
A 		67.4
(-2.2)
A 		303.3
(3)
P 		275
C 31.8
(-3)
A 		94.8
(-0.8)
A 		110.9
(-0.2)
A 		203.4
(3)
P 		172
avr 31.4
(-3) 		77.7
(-1.6) 		90.8
(-1.2) 		234.5
(3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 17.6
(-3)
A 		75.2
(2.4)
A 		38.6
(-1)
A 		42.8
(-0.6)
A 		81.9
(3)
A 		64.2
(1.3)
P 		64
B 52.1
(-2.6)
A 		74.9
(0)
A 		48.8
(-3)
A 		65.8
(-1)
A 		100.8
(3)
A 		88.6
(1.6)
A 		52
C 42.2
(-2.5)
A 		72.4
(0.2)
A 		37.1
(-3)
A 		49.9
(-1.8)
A 		69.2
(-0.1)
P 		102.9
(3)
P 		66
avr 37.3
(-3) 		74.2
(1.6) 		41.5
(-2.5) 		52.8
(-1.1) 		84
(2.8) 		85.2
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193686_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3105
Sequence Type Exemplar sequence
Representative Public ID F32A11.6 NCBI
Target Description F32A11.6 /REP_DB=WormBase Gene ID /WP=CE18657 /TR=Q9XV46 /GB=CAB04229.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064394 NCBI Caenorhabditis elegans See oma family member (moe-3) (moe-3) mRNA, complete cds. 11/11 None
SNAP00000006598 ENSEMBL cdna:SNAP chromosome:CEL140:II:13160566:13164117:-1 11/11 None
GENEFINDER00000006601 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13160566:13165629:-1 11/11 None
F32A11.6 ENSEMBL cdna:known chromosome:CEL140:II:13160566:13165551:-1 gene:F32A11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13160562-13164115(-) 98.55 98.55
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Gene Symbol moe-3
Ensembl F32A11.6
Entrez Gene 174960 Entrez gene
SwissProt Q9XV46 EMBL-EBI
WormBase CE18657 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04229 Hypothetical protein F32A11.6 [Caenorhabditis elegans] ref|NP_496795.1| See oma family member (moe-3) [Caenorhabditis elegans] 0.0
blast CAE59438 Hypothetical protein CBG02811 [Caenorhabditis briggsae] 1.0E-107
blast CAE59438 Hypothetical protein CBG02811 [Caenorhabditis briggsae] 1.0E-106
blast CAE74060 Hypothetical protein CBG21712 [Caenorhabditis briggsae] 5.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.3E-11
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.4E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.3E-11
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.4E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.3E-11
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.4E-13
Sequence
Target Sequence 
>C. ELEGANS:193686_AT
cgcccggcgaaactggaatcacgacaaaacaacaagtacaagacgaaactttgtgacaag
tacactaccactggactatgcccctatggcaaacggtgtctttttattcatcccgataat
cagccaaatgcatatatcagagctgataagctttatgaggtctcgcagcgccacgcactc
gcagatttacgggatcacgtggaatcacagattatgacaggaaatacgagaaactcgtat
aatcaacagccgccaccgatgggcggtctagaaatgcaatcttcaccgatgaaatcgagt
tctgactccagtcatatgcgttctccaatggctcagatgaattgtgaaaccacgcgtcct
caccctagctggccgttggaatcttcgtcctttttcttgccacccgaaatgtcttcaatc
aataataataatttgatgagcccatttgagacgccatttcccaacggctccacgggaatt
caaccacattttgtgacagcaaaacggagagcagcctttcctccagtgccttccaatttc
caacaagacgatgataatatgtcatcaattccaggattcgaccatcttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCGGCGAAACTGGAATCACGAC 585 255 493 Antisense
AGTACACTACCACTGGACTATGCCC 95 59 551 Antisense
ACGGTGTCTTTTTATTCATCCCGAT 657 95 585 Antisense
CCACGCACTCGCAGATTTACGGGAT 135 275 663 Antisense
GAAACTCGTATAATCAACAGCCGCC 441 357 722 Antisense
CAGCCGCCACCGATGGGCGGTCTAG 224 201 739 Antisense
CAGTCATATGCGTTCTCCAATGGCT 392 207 801 Antisense
CTTGCCACCCGAAATGTCTTCAATC 282 219 888 Antisense
ATGAGCCCATTTGAGACGCCATTTC 399 45 928 Antisense
AAAACGGAGAGCAGCCTTTCCTCCA 390 131 993 Antisense
AATTCCAGGATTCGACCATCTTGCA 704 175 1059 Antisense
Sequence Source Affymetrix Proprietary Database