[Home] | [Total List]

[193685_at]

Description C34C6.5 /REP_DB=WormBase Gene ID /WP=CE03053 /TR=Q18425 /GB=CAA91259.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Diacylglycerol kinase catalytic domain (presumed)
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 45      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 71      6grp_total > 45      4grp_total > 14      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 376.8
(0.1)
P 		258.7
(-2.8)
P 		251.9
(-3)
P 		496.6
(3)
P 		245
B 468.9
(3)
P 		382.8
(-0)
P 		298.3
(-3)
P 		412.2
(1)
P 		171
C 489.5
(3)
P 		274.2
(-3)
P 		286.9
(-2.6)
P 		488.2
(3)
P 		215
avr 445.1
(2.3) 		305.2
(-2.2) 		279
(-3) 		465.7
(3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 339.5
(1.9)
P 		365
(2.9)
P 		367.1
(3)
P 		301.2
(0.4)
P 		215
(-3)
P 		366.6
(3)
P 		152
B 337.6
(1.4)
P 		370.2
(3)
P 		368.4
(2.9)
P 		263.8
(-2.1)
P 		245.3
(-3)
P 		315.4
(0.4)
P 		125
C 340.7
(1.4)
P 		364.1
(2.3)
P 		345.4
(1.5)
P 		239.8
(-2.5)
P 		226.7
(-3)
P 		383.5
(3)
P 		157
avr 339.3
(1.8) 		366.4
(3) 		360.3
(2.7) 		268.3
(-1.3) 		229
(-3) 		355.2
(2.5) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 137.2
(3)
P 		56.2
(-3)
P 		65.9
(-2.3)
P 		72.7
(-1.8)
P 		81
B 149.5
(3)
P 		94.5
(-1.1)
P 		69.1
(-3)
P 		87.8
(-1.6)
P 		80
C 162.1
(3)
P 		78.8
(-3)
P 		100
(-1.5)
P 		82.3
(-2.7)
P 		83
avr 149.6
(3) 		76.5
(-3) 		78.3
(-2.9) 		80.9
(-2.6) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 62.6
(-3)
P 		129.8
(3)
P 		80
(-1.4)
P 		76.4
(-1.8)
P 		64.9
(-2.8)
P 		89.3
(-0.6)
P 		67
B 117.5
(2.4)
P 		123.2
(3)
P 		89.4
(-0.8)
P 		69.9
(-3)
P 		99.7
(0.4)
P 		117.6
(2.4)
P 		53
C 126.3
(2.8)
P 		111.1
(1.7)
P 		87.9
(-0)
P 		48.2
(-3)
P 		73.3
(-1.1)
P 		128.4
(3)
P 		80
avr 102.1
(1) 		121.4
(3) 		85.8
(-0.8) 		64.8
(-3) 		79.3
(-1.5) 		111.8
(2) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193685_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3826
Sequence Type Exemplar sequence
Representative Public ID C34C6.5 NCBI
Target Description C34C6.5 /REP_DB=WormBase Gene ID /WP=CE03053 /TR=Q18425 /GB=CAA91259.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Diacylglycerol kinase catalytic domain (presumed)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026847(11), NM_001026846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026847 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-274) (tag-274) mRNA, complete cds. 11/11 None
NM_001026846 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-274) (tag-274) mRNA, complete cds. 11/11 None
SNAP00000033105 ENSEMBL cdna:SNAP chromosome:CEL140:II:8699253:8701483:-1 11/11 None
GENEFINDER00000033110 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8699253:8701441:-1 11/11 None
C34C6.5b.2 ENSEMBL cdna:known chromosome:CEL140:II:8698979:8701477:-1 gene:C34C6.5 11/11 None
C34C6.5b.1 ENSEMBL cdna:known chromosome:CEL140:II:8698979:8701563:-1 gene:C34C6.5 11/11 None
C34C6.5b.3 ENSEMBL cdna:known chromosome:CEL140:II:8699012:8701520:-1 gene:C34C6.5 11/11 None
C34C6.5a ENSEMBL cdna:known chromosome:CEL140:II:8699253:8701591:-1 gene:C34C6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8699249-8701588(-) 100.0 100.0
Public Domain and Genome References
Ensembl C34C6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91259 Hypothetical protein C34C6.5a [Caenorhabditis elegans] ref|NP_001022017.1| Temporarily Assigned Gene name family member (tag-274) [Caenorhabditis elegans] 0.0
blast CAE48497 Hypothetical protein C34C6.5b [Caenorhabditis elegans] ref|NP_001022018.1| Temporarily Assigned Gene name family member (tag-274) [Caenorhabditis elegans] 0.0
blast CAE65944 Hypothetical protein CBG11121 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001206 EMBL-EBI Diacylglycerol kinase, catalytic domain 8.8E-39
Pfam IPR001206 EMBL-EBI Diacylglycerol kinase, catalytic domain 8.8E-39
Pfam IPR001206 EMBL-EBI Diacylglycerol kinase, catalytic domain 8.8E-39
Sequence
Target Sequence 
>C. ELEGANS:193685_AT
gttatgggattcattcgcagctgcaatctccgatcttataaaggacgccttacgtatcgt
ccatacaaaccaaaaggattccatccatcgtccaacgttttcagtgtgtatgaaaaaact
acacaacaaaggattgatgattcaaaagtaaaaacgaatggatccgtgtcagattccgaa
gaagaaacaatggagacaaaattccaaaattggacgctgcccgattcagatgaaactttg
gcagttggaagttctgatttagaagaaactgtcgtaatcgaggataattttgtgaatatc
tatgcagttactctttcccatatcgcagctgatggaccattcgctccaagtgccaaatta
gaagataatcgaattcatctttcgtatattctatggaaagatatcggtacacgagttaat
attgctaaatatcttttggcgattgaacacgagactcatctggatctaccctttgttaaa
cacgtggaagtgtcgtcaatgaaactggaagttatcagtgaaggatcacacgtagtactc
gatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATGGGATTCATTCGCAGCTGCA 361 447 814 Antisense
CAGCTGCAATCTCCGATCTTATAAA 576 203 831 Antisense
GACGCCTTACGTATCGTCCATACAA 39 381 857 Antisense
CATCCATCGTCCAACGTTTTCAGTG 595 209 895 Antisense
AATGGATCCGTGTCAGATTCCGAAG 3 163 970 Antisense
GACGCTGCCCGATTCAGATGAAACT 176 381 1026 Antisense
ATCGCAGCTGATGGACCATTCGCTC 319 35 1135 Antisense
CATTCGCTCCAAGTGCCAAATTAGA 302 217 1151 Antisense
ACACGAGACTCATCTGGATCTACCC 382 109 1260 Antisense
GGATCTACCCTTTGTTAAACACGTG 44 507 1275 Antisense
GGATCACACGTAGTACTCGATGGAG 163 511 1336 Antisense
Sequence Source Affymetrix Proprietary Database