[Home] | [Total List]

[193684_at] BTB (also known as BR-C/Ttk) domain. (2 domains)

Description F29C12.5 /REP_DB=WormBase Gene ID /WP=CE19823 /TR=Q9XV51 /GB=CAB04217.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain. (2 domains)
Cluster 6grp_total > 92      4grp_total > 09      6grp_cgc > 97      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 32.9
(-3)
A 		55.5
(-2.4)
A 		70.7
(-1.9)
A 		241.7
(3)
P 		209
B 19.1
(-3)
A 		59.8
(-1)
A 		33.8
(-2.3)
A 		143.8
(3)
P 		125
C 55.9
(-2.6)
P 		48.1
(-3)
A 		62
(-2.3)
A 		164.8
(3)
P 		117
avr 36
(-3) 		54.5
(-2.2) 		55.5
(-2.2) 		183.4
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 97.2
(1.9)
A 		102.8
(2.7)
A 		66.6
(-2.6)
M 		105
(3)
A 		87.7
(0.5)
A 		63.9
(-3)
A 		41
B 51
(-1)
A 		43.9
(-2.4)
P 		58.2
(0.4)
A 		40.6
(-3)
A 		71.5
(3)
A 		54.5
(-0.3)
A 		31
C 75.9
(0.8)
M 		64.6
(-0.4)
P 		86.6
(2)
A 		80.4
(1.3)
A 		95.7
(3)
A 		40.6
(-3)
A 		55
avr 74.7
(1.1) 		70.4
(0.3) 		70.5
(0.3) 		75.3
(1.2) 		85
(3) 		53
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 12
(-3)
A 		12.1
(-3)
A 		18.5
(-1.3)
A 		35.4
(3)
P 		23
B 6.1
(-3)
A 		14.8
(-0.9)
A 		7.8
(-2.6)
A 		30.6
(3)
P 		25
C 18.5
(-1)
P 		13.8
(-3)
A 		21.6
(0.3)
A 		27.8
(3)
P 		14
avr 12.2
(-3) 		13.6
(-2.6) 		16
(-1.8) 		31.3
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17.9
(-2.1)
A 		36.6
(3)
A 		14.5
(-3)
M 		26.6
(0.3)
A 		26.5
(0.3)
A 		15.6
(-2.7)
A 		22
B 17.7
(-0.7)
A 		14.6
(-1.7)
P 		14.1
(-1.9)
A 		10.8
(-3)
A 		29
(3)
A 		20.3
(0.1)
A 		18
C 28.1
(2)
M 		19.7
(-0.9)
P 		22.1
(-0.1)
A 		16.2
(-2.1)
A 		31
(3)
A 		13.6
(-3)
A 		17
avr 21.2
(-0.7) 		23.6
(0.5) 		16.9
(-2.8) 		17.9
(-2.3) 		28.8
(3) 		16.5
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3134
Sequence Type Exemplar sequence
Representative Public ID F29C12.5 NCBI
Target Description F29C12.5 /REP_DB=WormBase Gene ID /WP=CE19823 /TR=Q9XV51 /GB=CAB04217.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain. (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064387 NCBI Caenorhabditis elegans F29C12.5 (F29C12.5) mRNA, complete cds. 11/11 None
SNAP00000014926 ENSEMBL cdna:SNAP chromosome:CEL140:II:13122934:13124685:1 11/11 None
GENEFINDER00000014933 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13122934:13124685:1 11/11 None
F29C12.5 ENSEMBL cdna:known chromosome:CEL140:II:13122934:13124685:1 gene:F29C12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13122930-13124682(+) 100.0 100.0
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain. (2 domains)
Gene Symbol bath-45
Ensembl F29C12.5
Entrez Gene 185115 Entrez gene
SwissProt Q9XV51 EMBL-EBI
WormBase CE19823 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04217 Hypothetical protein F29C12.5 [Caenorhabditis elegans] ref|NP_496788.1| F29C12.5 [Caenorhabditis elegans] 0.0
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 2.0E-62
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 5.5E-21
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-28
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.5E-27
Sequence
Target Sequence 
>C. ELEGANS:193684_AT
gtctctcaaaagttggcactgccgatcagatcgaagcagcgagggcgattcttccatcag
atattccgaagagagcgctaaaaaagttcgatgagtcgaacaaggaattttccgatgtta
tttttgtcgttgaacacaataaattctatgtcttaaagcagatcctcgcatctcactctt
cacacttcaagaaaatcttcgtggaaaatgtggacaaacgagaattcacacttgcggaca
tcgactcgaacgattttcagaatcttgtggaggtcatgtatggagtatcctttatcgatg
atctcacagtcgaaggagttcttcatttggcgcatatgtacgataggccttttccaatgc
aaaaatgcgtggaatttctgatcgatttgtcagaaaaatcaccgaaggagaagcttaaaa
tcgctaaagcttatcaattgaagaatttggaaaaggcagctctggcgagaatcaacttgc
ccgagtcaattcgggccgcattgtcttgtgatatggctcaaatggaagtggaagttttga
aggctctgatgcagaaagcactattccacttgtcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCTCAAAAGTTGGCACTGCCGA 179 471 812 Antisense
GGGCGATTCTTCCATCAGATATTCC 169 493 854 Antisense
CTTAAAGCAGATCCTCGCATCTCAC 436 221 963 Antisense
TTCACACTTGCGGACATCGACTCGA 8 687 1036 Antisense
GAGTATCCTTTATCGATGATCTCAC 160 399 1094 Antisense
AAGGAGTTCTTCATTTGGCGCATAT 306 161 1124 Antisense
TACGATAGGCCTTTTCCAATGCAAA 83 647 1150 Antisense
GGCAGCTCTGGCGAGAATCAACTTG 154 537 1266 Antisense
GAATCAACTTGCCCGAGTCAATTCG 511 327 1280 Antisense
GGGCCGCATTGTCTTGTGATATGGC 325 493 1304 Antisense
GAAAGCACTATTCCACTTGTCGGAC 602 359 1365 Antisense
Sequence Source Affymetrix Proprietary Database