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[193682_s_at]

Description C44C1.4 /REP_DB=WormBase Gene ID /WP=CE04214 /TR=Q18609 /GB=AAA82364.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=yeast vacuolar protein sorting protein 33 (SLP1)
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 71      6grp_total > 06      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 311.5
(-0.1)
P 		353.9
(3)
P 		273
(-3)
P 		336.5
(1.7)
P 		81
B 358.1
(3)
P 		244.5
(-3)
P 		320.2
(1)
P 		347.1
(2.4)
P 		114
C 362.8
(3)
P 		306.1
(-1.1)
P 		279
(-3)
P 		311.7
(-0.7)
P 		84
avr 344.1
(3) 		301.5
(-1.8) 		290.7
(-3) 		331.8
(1.6) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 496.9
(3)
P 		372.6
(0.2)
P 		321.1
(-0.9)
P 		319.9
(-0.9)
P 		226
(-3)
P 		251.8
(-2.4)
P 		271
B 426
(3)
P 		348.6
(0.4)
P 		293.2
(-1.4)
P 		320.9
(-0.5)
P 		246.5
(-3)
P 		267.3
(-2.3)
P 		180
C 433.2
(3)
P 		309.7
(-0.9)
P 		365.3
(0.8)
P 		255.7
(-2.7)
P 		262.9
(-2.4)
P 		245.1
(-3)
P 		188
avr 452
(3) 		343.6
(-0.1) 		326.5
(-0.6) 		298.8
(-1.4) 		245.1
(-3) 		254.7
(-2.7) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 113.4
(3)
P 		76.8
(-0.4)
P 		71.4
(-0.9)
P 		49.3
(-3)
P 		64
B 114.2
(3)
P 		60.4
(-3)
P 		74.2
(-1.5)
P 		74
(-1.5)
P 		54
C 120.1
(3)
P 		88
(0.1)
P 		97.3
(1)
P 		52.6
(-3)
P 		68
avr 115.9
(3) 		75.1
(-1.3) 		81
(-0.7) 		58.6
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 91.6
(-0.4)
P 		132.5
(3)
P 		69.9
(-2.3)
P 		81.1
(-1.3)
P 		68.2
(-2.4)
P 		61.3
(-3)
P 		71
B 148.2
(3)
P 		116
(0.5)
P 		71.2
(-3)
P 		85
(-1.9)
P 		100.1
(-0.7)
P 		99.7
(-0.8)
P 		77
C 160.6
(3)
P 		94.5
(-0.6)
P 		93
(-0.7)
P 		51.4
(-3)
P 		85.1
(-1.1)
P 		82
(-1.3)
P 		109
avr 133.5
(3) 		114.3
(1.1) 		78
(-2.5) 		72.5
(-3) 		84.5
(-1.8) 		81
(-2.2) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193682_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18535
Sequence Type Exemplar sequence
Representative Public ID C44C1.4 NCBI
Target Description C44C1.4 /REP_DB=WormBase Gene ID /WP=CE04214 /TR=Q18609 /GB=AAA82364.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=yeast vacuolar protein sorting protein 33 (SLP1)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171622 NCBI Caenorhabditis elegans C44C1.4a (C44C1.4) mRNA, complete cds. 11/11 None
SNAP00000015466 ENSEMBL cdna:SNAP chromosome:CEL140:X:970721:974749:-1 11/11 None
GENEFINDER00000015471 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:970721:974749:-1 11/11 None
C44C1.4a ENSEMBL cdna:known chromosome:CEL140:X:970617:974773:-1 gene:C44C1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180449 2 1 NM_171622 193682_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:970720-974749(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44C1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82364 Hypothetical protein C44C1.4a [Caenorhabditis elegans] ref|NP_741714.1| C44C1.4a [Caenorhabditis elegans] 0.0
blast CAE63590 Hypothetical protein CBG08081 [Caenorhabditis briggsae] 0.0
blast AAH84162 LOC495045 protein [Xenopus laevis] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR001619 EMBL-EBI Sec1-like protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193682_S_AT
gtatcaatcttgttcgaggactgctgaaaaatacgaaaaccagagaagtggacatcatcc
gtcttgtgcttctctacgctcttcgtttcgaaaacgcacccggcaacgaattaaactcat
tgatcagtcaactcagaccacagcatccaaaaatccatcaaacggtgtcgacgctgctca
aatatggtggactttcaaggagacctgccgatttgtttggtggtgaatcgactattgaca
ttacgaagaggttcatcaaaggactcaaaggagttgagaacatttacacccagcattcgc
cgtatctcaagaacatgatcgagtcttgccagcgtgggaggcttgacaactacccgcttc
ttagcaatgaatgcgaccgaatggataatattattgtgtttattgtgggtggagccacat
atgaggaggcggcttatgtgagaagcttgaatgaaaagcggatgcaaggatacggagggc
ctgctgttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCAATCTTGTTCGAGGACTGCT 127 453 1082 Antisense
TTCTCTACGCTCTTCGTTTCGAAAA 72 691 1151 Antisense
TCAGTCAACTCAGACCACAGCATCC 621 623 1205 Antisense
TCCATCAAACGGTGTCGACGCTGCT 296 587 1235 Antisense
GACGCTGCTCAAATATGGTGGACTT 83 381 1251 Antisense
GAGACCTGCCGATTTGTTTGGTGGT 287 395 1281 Antisense
GTTGAGAACATTTACACCCAGCATT 55 439 1354 Antisense
GAACATGATCGAGTCTTGCCAGCGT 409 351 1392 Antisense
GTGGGAGGCTTGACAACTACCCGCT 473 485 1415 Antisense
CAACTACCCGCTTCTTAGCAATGAA 707 187 1428 Antisense
AGGATACGGAGGGCCTGCTGTTGTT 359 55 1548 Antisense
Sequence Source Affymetrix Proprietary Database