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[193681_at] Ubiquitin carboxyl-terminal hydrolases family 2

Description Y57G11B.3 /REP_DB=WormBase Gene ID /WP=CE14922 /TR=O18226 /GB=CAB16501.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ubiquitin carboxyl-terminal hydrolases family 2
Cluster 6grp_total > 39      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 15.5
(-2.3)
A 		59.9
(2.2)
A 		8.9
(-3)
A 		67.4
(3)
A 		59
B 74.9
(3)
A 		18.9
(-1.6)
A 		2.1
(-3)
A 		9
(-2.4)
A 		73
C 57.4
(-0.3)
A 		25.4
(-3)
A 		33.9
(-2.3)
A 		97.7
(3)
A 		72
avr 49.3
(1.8) 		34.7
(-0.3) 		15
(-3) 		58
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 30.1
(1.3)
A 		19.6
(-1)
A 		28.4
(0.9)
A 		10.6
(-3)
A 		37.9
(3)
A 		17.4
(-1.5)
A 		27
B 43.3
(3)
A 		32.4
(0.5)
A 		19.2
(-2.6)
A 		17.3
(-3)
A 		35.2
(1.1)
A 		20.2
(-2.3)
A 		26
C 14.1
(-2.3)
A 		55.1
(3)
A 		8.5
(-3)
A 		21.4
(-1.3)
A 		31.7
(-0)
A 		44.3
(1.6)
A 		47
avr 29.2
(1) 		35.7
(3) 		18.7
(-2.3) 		16.4
(-3) 		34.9
(2.8) 		27.3
(0.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 5.7
(-1.1)
A 		13
(3)
A 		2.3
(-3)
A 		9.9
(1.3)
A 		11
B 23.9
(3)
A 		4.7
(-1.9)
A 		0.5
(-3)
A 		1.9
(-2.6)
A 		23
C 19
(3)
A 		7.3
(-3)
A 		11.8
(-0.7)
A 		16.5
(1.7)
A 		12
avr 16.2
(3) 		8.3
(-1.2) 		4.9
(-3) 		9.4
(-0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.6
(-1)
A 		7
(-0)
A 		6.2
(-0.6)
A 		2.7
(-3)
A 		11.4
(3)
A 		4.2
(-2)
A 		9
B 15.1
(3)
A 		10.8
(0.5)
A 		4.7
(-2.9)
A 		4.6
(-3)
A 		14.3
(2.5)
A 		7.5
(-1.3)
A 		11
C 5.2
(-1.8)
A 		16.8
(3)
A 		2.2
(-3)
A 		4.3
(-2.1)
A 		10.3
(0.3)
A 		14.8
(2.2)
A 		15
avr 8.6
(0.5) 		11.5
(2.6) 		4.4
(-2.6) 		3.9
(-3) 		12
(3) 		8.8
(0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10232
Sequence Type Exemplar sequence
Representative Public ID Y57G11B.3 NCBI
Target Description Y57G11B.3 /REP_DB=WormBase Gene ID /WP=CE14922 /TR=O18226 /GB=CAB16501.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ubiquitin carboxyl-terminal hydrolases family 2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070367 NCBI Caenorhabditis elegans Y57G11B.3 (Y57G11B.3) mRNA, complete cds. 11/11 None
Y57G11B.3 ENSEMBL cdna:known chromosome:CEL140:IV:14571692:14574305:-1 gene:Y57G11B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021639 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021643 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14571697-14574311(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ubiquitin carboxyl-terminal hydrolases family 2
Ensembl Y57G11B.3
Entrez Gene 190367 Entrez gene
SwissProt O18226 EMBL-EBI
WormBase CE14922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16501 Hypothetical protein Y57G11B.3 [Caenorhabditis elegans] ref|NP_502768.1| Y57G11B.3 [Caenorhabditis elegans] 0.0
blast CAE73944 Hypothetical protein CBG21567 [Caenorhabditis briggsae] 5.0E-92
blast CAB04152 Hypothetical protein F21A3.6 [Caenorhabditis elegans] ref|NP_506867.2| F21A3.6 [Caenorhabditis elegans] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:193681_AT
gtagccaggaacgtttgtactcgagattctgtgaagaatatcaacgtggcagtgaagata
atccggaatcttgttcgtcaatatgagaaatggacaaatggggagatggttccgatgcct
gatctgagagcagaaatgcctgccacatgtcctttcaaaggaaatcctccgtcaggaccc
caatctcccgcagttcaatctccacttttcggtcggtttcaaaaaaaaatttcaaacttt
tcaatattcatacttttttcttcagtttcagacttgaataacccggatgccaaaattaaa
atgcgccaggagatggatagaattacagaacggcagaagcatatattcacagaaacattt
ccagttatttttaaagagtataagaggaacgggctggttttgtttgccaaatatttttcc
gaattcccacactacaaaaatatttggccgcaatttcgaactctccaagactcggcccta
cttgcttccaatgagcttgccaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGCCAGGAACGTTTGTACTCGAG 385 457 466 Antisense
GATAATCCGGAATCTTGTTCGTCAA 46 423 522 Antisense
GGTTCCGATGCCTGATCTGAGAGCA 559 507 573 Antisense
GCAGAAATGCCTGCCACATGTCCTT 286 313 595 Antisense
TCAAAGGAAATCCTCCGTCAGGACC 564 627 620 Antisense
TACTTTTTTCTTCAGTTTCAGACTT 60 643 716 Antisense
TTCAGACTTGAATAACCCGGATGCC 647 687 732 Antisense
CGGGCTGGTTTTGTTTGCCAAATAT 303 1 855 Antisense
TGCCAAATATTTTTCCGAATTCCCA 180 587 870 Antisense
TTGGCCGCAATTTCGAACTCTCCAA 341 707 909 Antisense
CTTGCTTCCAATGAGCTTGCCAACC 145 219 946 Antisense
Sequence Source Affymetrix Proprietary Database