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[193680_at]

Description K08E5.3 /REP_DB=WormBase Gene ID /WP=CE28049 /GEN=mua-3 /GB=CAC42345.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=LDL receptor related protein, EGF and CMP repeats
Cluster 6grp_total > 53      4grp_total > 10      6grp_cgc > 90      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 3.8
(-2.9)
A 		3.6
(-3)
A 		4.3
(-2.7)
A 		17.6
(3)
A 		14
B 6.3
(1.4)
A 		3.2
(-2.2)
A 		2.5
(-3)
A 		7.7
(3)
A 		5
C 2.7
(-2.9)
A 		8
(-1.8)
A 		2.4
(-3)
A 		30
(3)
A 		28
avr 4.3
(-2.5) 		4.9
(-2.3) 		3.1
(-3) 		18.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.9
(-2)
A 		3.1
(-2.9)
A 		8.5
(3)
A 		3.6
(-2.3)
A 		3
(-3)
A 		5.4
(-0.4)
A 		6
B 4.7
(-2.5)
A 		5.6
(-2.3)
A 		22
(2.4)
A 		11.9
(-0.5)
A 		24.1
(3)
A 		3.1
(-3)
A 		21
C 9.8
(0.3)
A 		12.1
(1.2)
A 		16.7
(3)
A 		6.1
(-1.1)
A 		15.9
(2.7)
A 		1.3
(-3)
A 		15
avr 6.1
(-1.6) 		6.9
(-1.3) 		15.7
(3) 		7.2
(-1.1) 		14.3
(2.3) 		3.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.4
(-1)
A 		0.8
(-3)
A 		1.1
(-2)
A 		2.6
(3)
A 		2
B 2
(3)
A 		0.8
(-2.1)
A 		0.6
(-3)
A 		1.6
(1.3)
A 		1
C 0.9
(-2.9)
A 		2.3
(-0.9)
A 		0.8
(-3)
A 		5.1
(3)
A 		4
avr 1.4
(-1.4) 		1.3
(-1.7) 		0.8
(-3) 		3.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.1
(-1)
A 		1.9
(3)
A 		0.9
(-2)
A 		0.9
(-2)
A 		1.3
(0)
A 		1
B 1.6
(-2.7)
A 		1.9
(-2.4)
A 		5.3
(-0.1)
A 		3.1
(-1.6)
A 		9.8
(3)
A 		1.1
(-3)
A 		9
C 3.6
(1)
A 		3.7
(1.1)
A 		4.2
(1.8)
A 		1.2
(-2)
A 		5.2
(3)
A 		0.4
(-3)
A 		5
avr 2
(-1.5) 		2.2
(-1.2) 		3.8
(1) 		1.7
(-1.9) 		5.3
(3) 		0.9
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7425
Sequence Type Exemplar sequence
Representative Public ID K08E5.3 NCBI
Target Description K08E5.3 /REP_DB=WormBase Gene ID /WP=CE28049 /GEN=mua-3 /GB=CAC42345.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=LDL receptor related protein, EGF and CMP repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027503(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027503 NCBI Caenorhabditis elegans MUscle Attachment abnormal family member (mua-3) (mua-3) mRNA, complete cds. 10/11 None
SNAP00000037011 ENSEMBL cdna:SNAP chromosome:CEL140:III:10160694:10167611:1 9/11 None
K08E5.3a ENSEMBL cdna:known chromosome:CEL140:III:10160586:10183398:1 gene:K08E5.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176430 2 1 NM_001027503 193680_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10160581-10166187(+) 100.0 100.0
Public Domain and Genome References
Ensembl K08E5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42345 Hypothetical protein K08E5.3a [Caenorhabditis elegans] emb|CAA83226.2| Hypothetical protein K08E5.3a [Caenorhabditis elegans] ref|NP_001022674.1| MUscle Attachment abnormal family member (mua-3) [Caenorhabditis elegans] sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor mua-3 precursor gb|AAD29428.1| transmembrane cell adhesion receptor MUA-3 precursor [Caenorhabditis elegans] 0.0
blast CAE64964 Hypothetical protein CBG09798 [Caenorhabditis briggsae] 0.0
blast CAH19103 Hypothetical protein K08E5.3b [Caenorhabditis elegans] emb|CAH19087.1| Hypothetical protein K08E5.3b [Caenorhabditis elegans] ref|NP_001022675.1| MUscle Attachment abnormal family member (mua-3) [Caenorhabditis elegans] 0.0
blast S43562 K08E5.3 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 2.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.1E-4
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.1E-4
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 4.5E-10
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.2E-61
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.7E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.1E-4
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 4.5E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 2.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 9.1E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 4.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 4.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-4
Pfam IPR000082 EMBL-EBI SEA domain 1.6E-36
Pfam IPR000082 EMBL-EBI SEA domain 1.1E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022674.1 1 3417-3439
K08E5.3a 1 3417-3439
Sequence
Target Sequence 
>C. ELEGANS:193680_AT
cggactccatgaaagctgccaaaagaatagtgaatcaaaatatgaatgtatttgtcgaga
ggggtttaccatatttgaagggacttgtcgtgaattaattgatgaatgtgctcaaggaaa
acacgattgtcacccagaagctcgatgtgtagatgctcttattggatatgagtgtctttg
cagagaagggtacctggatacttctatcgatccaaaagcaagaccaggcagaaaatgccg
aaaattaatcaacgaatgcacaaatgctttaatgaacgattgctctcagaatgcaagatg
tttagacaaaccaattggatacacttgcagatgtcaagatgattacgtcgatgtttccag
agaaggagcaagaaaacctggaagaaattgcacgcaagcaataaatgagtgtgcatcaaa
cttacataactgtgacacacatgctatttgccaagatcaaccagttgggtactcatgcag
atgccccttcggttttattgattccagtccgacagcgctggagccgggaagaaagtgtgt
tcagggtgagtgctcgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGACTCCATGAAAGCTGCCAAAAG 139 243 1473 Antisense
AACACGATTGTCACCCAGAAGCTCG 21 135 1592 Antisense
GAAGCTCGATGTGTAGATGCTCTTA 351 343 1609 Antisense
GGGTACCTGGATACTTCTATCGATC 290 497 1660 Antisense
GATTACGTCGATGTTTCCAGAGAAG 58 431 1813 Antisense
GTGACACACATGCTATTTGCCAAGA 170 483 1904 Antisense
GTTGGGTACTCATGCAGATGCCCCT 533 435 1936 Antisense
GATGCCCCTTCGGTTTTATTGATTC 454 411 1952 Antisense
TTATTGATTCCAGTCCGACAGCGCT 105 679 1967 Antisense
TCCGACAGCGCTGGAGCCGGGAAGA 329 595 1980 Antisense
GTGTGTTCAGGGTGAGTGCTCGAAG 175 489 2007 Antisense
Sequence Source Affymetrix Proprietary Database