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[193677_at] Kunitz/Bovine pancreatic trypsin inhibitor domain

Description F32D8.7 /REP_DB=WormBase Gene ID /WP=CE05786 /TR=Q19961 /GB=CAA98452.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain
Cluster 6grp_high1_10_10 > 91      6grp_total > 93      4grp_total > 50      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 53.4
(-2.4)
A 		342.5
(3)
P 		296.7
(2.1)
P 		21.1
(-3)
A 		321
B 67.2
(-2.1)
A 		322
(3)
P 		287.4
(2.3)
P 		23.5
(-3)
A 		299
C 40.2
(-2.5)
A 		324.6
(3)
P 		303.4
(2.6)
P 		14.6
(-3)
A 		310
avr 53.6
(-2.3) 		329.7
(3) 		295.8
(2.3) 		19.7
(-3) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 104.2
(-3)
A 		227.7
(-0.2)
P 		137.7
(-2.2)
P 		253.4
(0.4)
P 		365.6
(3)
P 		162.2
(-1.7)
P 		261
B 124.5
(-3)
P 		193.7
(-1.4)
P 		163.6
(-2.1)
P 		262.1
(0.2)
P 		382.3
(3)
P 		148.5
(-2.4)
P 		258
C 133.7
(-3)
A 		177.2
(-2.1)
P 		162.6
(-2.4)
P 		352.8
(1.7)
P 		412.1
(3)
P 		198.9
(-1.6)
P 		278
avr 120.8
(-3) 		199.5
(-1.2) 		154.6
(-2.2) 		289.4
(0.8) 		386.7
(3) 		169.9
(-1.9) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 19.5
(-1.7)
A 		74.4
(2.7)
P 		77.6
(3)
P 		3.1
(-3)
A 		75
B 21.4
(-1.7)
A 		79.5
(3)
P 		66.6
(2)
P 		5
(-3)
A 		75
C 13.3
(-2.4)
A 		93.3
(2.3)
P 		105.8
(3)
P 		2.5
(-3)
A 		103
avr 18.1
(-1.9) 		82.4
(2.9) 		83.3
(3) 		3.5
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 19.2
(-3)
A 		81
(1.1)
P 		30
(-2.3)
P 		64.3
(-0)
P 		110.3
(3)
P 		39.5
(-1.7)
P 		91
B 43.3
(-2.8)
P 		64.5
(-1.7)
P 		39.7
(-3)
P 		69.4
(-1.5)
P 		155.3
(3)
P 		55.4
(-2.2)
P 		116
C 49.6
(-2.5)
A 		54.1
(-2.2)
P 		41.4
(-3)
P 		71
(-1.1)
P 		133.4
(3)
P 		66.6
(-1.4)
P 		92
avr 37.4
(-3) 		66.5
(-1.2) 		37
(-3) 		68.2
(-1.1) 		133
(3) 		53.8
(-2) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12943
Sequence Type Exemplar sequence
Representative Public ID F32D8.7 NCBI
Target Description F32D8.7 /REP_DB=WormBase Gene ID /WP=CE05786 /TR=Q19961 /GB=CAA98452.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073378 NCBI Caenorhabditis elegans F32D8.7 (F32D8.7) mRNA, complete cds. 11/11 None
SNAP00000041033 ENSEMBL cdna:SNAP chromosome:CEL140:V:10901377:10903131:1 11/11 None
GENEFINDER00000041042 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10901404:10903131:1 11/11 None
F32D8.7 ENSEMBL cdna:known chromosome:CEL140:V:10901053:10903278:1 gene:F32D8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10901376-10903131(+) 95.43 100.0
Public Domain and Genome References
Gene Title Kunitz/Bovine pancreatic trypsin inhibitor domain
Ensembl F32D8.7
Entrez Gene 179511 Entrez gene
SwissProt Q19961 EMBL-EBI
WormBase CE05786 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98452 Hypothetical protein F32D8.7 [Caenorhabditis elegans] ref|NP_505779.1| F32D8.7 [Caenorhabditis elegans] 1.0E-118
blast CAA98452 Hypothetical protein F32D8.7 [Caenorhabditis elegans] ref|NP_505779.1| F32D8.7 [Caenorhabditis elegans] 1.0E-111
blast CAA98452 Hypothetical protein F32D8.7 [Caenorhabditis elegans] ref|NP_505779.1| F32D8.7 [Caenorhabditis elegans] 1.0E-105
blast CAE64920 Hypothetical protein CBG09740 [Caenorhabditis briggsae] 1.0E-98
blast CAE64920 Hypothetical protein CBG09740 [Caenorhabditis briggsae] 7.0E-94
blast CAE64920 Hypothetical protein CBG09740 [Caenorhabditis briggsae] 1.0E-89
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505779.1 1 21-40
F32D8.7 1 21-40
SNAP00000041033 1 21-40
GENEFINDER00000041042 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:193677_AT
ttttgcggttttcggccaatgttcacatataatagggagacccttcaatgtgacgaattt
tggttccccgggtgtagaacggctgagacaaacgcgaatctttttgaggattatcagcag
tgtcaaaaaattgctgatttgtgtaaaccaactccagcaccaactcttgctccattccga
ccacgtccaacaactcgccggttacctccaccaacaacaccaccaccacctcctccgcct
ccagctccatctccattcgtagatgcatttaagtcatttggtgggaataatcaagctggt
caaggtgcacttggagcactaggaatgtttactggaagtggattgggcccaactggtcaa
ggaccacttggaaatttctctccgaatccgaatgctggagctgcacctaatccaggcccg
gctgcaggggctggaggtccagacggtcaagatcttggactatttggattgattcaacaa
ggaataatgggtgctcaagctgccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGCGGTTTTCGGCCAATGTTCA 16 677 526 Antisense
TAGGGAGACCCTTCAATGTGACGAA 332 651 558 Antisense
CAATGTGACGAATTTTGGTTCCCCG 114 183 571 Antisense
GTTCCCCGGGTGTAGAACGGCTGAG 344 439 588 Antisense
AGCTCCATCTCCATTCGTAGATGCA 324 81 768 Antisense
GGATTGGGCCCAACTGGTCAAGGAC 635 507 865 Antisense
GGACCACTTGGAAATTTCTCTCCGA 667 521 886 Antisense
AATTTCTCTCCGAATCCGAATGCTG 214 175 898 Antisense
GAATCCGAATGCTGGAGCTGCACCT 223 329 909 Antisense
GCTGGAGGTCCAGACGGTCAAGATC 245 291 955 Antisense
AATAATGGGTGCTCAAGCTGCCGGA 616 171 1008 Antisense
Sequence Source Affymetrix Proprietary Database