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[193675_at] Human plasma-cell membrane glycoprotein PC-1 like

Description C27A7.3 /REP_DB=WormBase Gene ID /WP=CE27738 /TR=P90755 /GB=CAB02785.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human plasma-cell membrane glycoprotein PC-1 like
Cluster 6grp_total > 40      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 63.5
(1.3)
P 		72.1
(3)
P 		43.8
(-2.5)
A 		41.3
(-3)
A 		31
B 57.6
(1.5)
P 		48.7
(-0.8)
A 		40.2
(-3)
M 		63.3
(3)
P 		23
C 37
(-1.4)
P 		24.4
(-3)
A 		55.5
(1)
A 		70.6
(3)
P 		46
avr 52.7
(0.1) 		48.4
(-2) 		46.5
(-3) 		58.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 40.8
(-2.1)
A 		73
(2)
P 		81.1
(3)
P 		44.8
(-1.6)
A 		33.3
(-3)
A 		40
(-2.2)
A 		48
B 62.8
(2.4)
A 		49.5
(0.6)
P 		44
(-0.2)
P 		67
(3)
A 		23.9
(-3)
A 		32
(-1.9)
A 		43
C 33.8
(-3)
A 		39.5
(-1.6)
P 		49.4
(0.7)
M 		58.5
(2.9)
A 		59
(3)
P 		40.3
(-1.5)
P 		25
avr 45.8
(-0.6) 		54
(1.8) 		58.2
(3) 		56.8
(2.6) 		38.7
(-2.6) 		37.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 23.1
(3)
P 		15.7
(0.4)
P 		11.4
(-1.1)
A 		6
(-3)
A 		17
B 18.4
(3)
P 		12
(-1.2)
A 		9.3
(-3)
M 		13.5
(-0.2)
P 		9
C 12.3
(-0.4)
P 		7
(-3)
A 		19.3
(3)
A 		11.9
(-0.6)
P 		12
avr 17.9
(3) 		11.6
(-2.1) 		13.3
(-0.7) 		10.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.5
(-3)
A 		26
(3)
P 		17.7
(0.3)
P 		11.4
(-1.7)
A 		10
(-2.2)
A 		9.7
(-2.3)
A 		19
B 21.8
(3)
A 		16.5
(0.4)
P 		10.7
(-2.5)
P 		17.8
(1)
A 		9.7
(-3)
A 		11.9
(-1.9)
A 		12
C 12.5
(-2.4)
A 		12.1
(-2.8)
P 		12.6
(-2.3)
M 		11.8
(-3)
A 		19.1
(3)
P 		13.5
(-1.6)
P 		7
avr 13.9
(-1) 		18.2
(3) 		13.7
(-1.2) 		13.7
(-1.2) 		12.9
(-1.9) 		11.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14742
Sequence Type Exemplar sequence
Representative Public ID C27A7.3 NCBI
Target Description C27A7.3 /REP_DB=WormBase Gene ID /WP=CE27738 /TR=P90755 /GB=CAB02785.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human plasma-cell membrane glycoprotein PC-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073645 NCBI Caenorhabditis elegans C27A7.3 (C27A7.3) mRNA, complete cds. 11/11 A 
SNAP00000042922 ENSEMBL cdna:SNAP chromosome:CEL140:V:12144034:12146826:1 11/11 None
GENEFINDER00000042929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12136156:12146826:1 9/11 None
C27A7.3 ENSEMBL cdna:known chromosome:CEL140:V:12143464:12146826:1 gene:C27A7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12143586-12146471(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human plasma-cell membrane glycoprotein PC-1 like
Ensembl C27A7.3
Entrez Gene 179665 Entrez gene
SwissProt P90755 EMBL-EBI
WormBase CE27738 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9117 nucleotide metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02785 Hypothetical protein C27A7.3 [Caenorhabditis elegans] ref|NP_506046.1| C27A7.3 [Caenorhabditis elegans] 0.0
blast CAE75401 Hypothetical protein CBG23391 [Caenorhabditis briggsae] 0.0
blast CAB02784 Hypothetical protein C27A7.1 [Caenorhabditis elegans] ref|NP_506044.1| C27A7.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506046.1 1 24-46
C27A7.3 1 24-46
Sequence
Target Sequence 
>C. ELEGANS:193675_AT
aagccgaggggcacgatttgaagaagctttctcttcatttggaaaattgcaaagaacacc
aaaatctcccgatttactcgaaaaataactgctttcaaagttattgtgagaattcactta
tcattcataaaaatcgtcaagatgttcgcaagggtgtgatcgaatctttaacattcagct
tctccagaaaccagagtgtttttgaaaattcatttagttttgtaaacactaaatattcaa
ttgaatgtcctaaacttgacaccaaagataatttcttcactgctggatcagaagcaatta
gtaaactagccaatgctcaatacaaattcccatcttcttttatgaaaagtgagttaattt
ccagtttactttctttgaaagatgaaaccatcaagtttgtagatatttgggtgcctcttt
caataaaaacagatgaatacctaaaacattatggaaaactatttgtactatctggactag
cggttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCGAGGGGCACGATTTGAAGAA 104 147 1481 Antisense
GAAGCTTTCTCTTCATTTGGAAAAT 278 343 1503 Antisense
GAACACCAAAATCTCCCGATTTACT 586 349 1534 Antisense
AATCGTCAAGATGTTCGCAAGGGTG 178 169 1612 Antisense
GCAAGGGTGTGATCGAATCTTTAAC 48 319 1628 Antisense
AATCTTTAACATTCAGCTTCTCCAG 199 171 1643 Antisense
CAGCTTCTCCAGAAACCAGAGTGTT 48 205 1656 Antisense
TACAAATTCCCATCTTCTTTTATGA 691 641 1801 Antisense
TGAGTTAATTTCCAGTTTACTTTCT 488 567 1830 Antisense
GTAGATATTTGGGTGCCTCTTTCAA 423 455 1879 Antisense
TGTACTATCTGGACTAGCGGTTGAT 36 561 1944 Antisense
Sequence Source Affymetrix Proprietary Database