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[193673_s_at] Inosine-uridine preferring nucleoside hydrolase

Description Y43F8C.13 /REP_DB=WormBase Gene ID /WP=CE21911 /TR=Q9XWN7 /GB=CAA21614.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Inosine-uridine preferring nucleoside hydrolase
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_high_8_8 > 52      6grp_highest_nonorm > 42      6grp_total > 42      4grp_total > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1532
1 2 3 4 range
A 1287.4
(1.2)
P 		1727.2
(3)
P 		1620.1
(2.6)
P 		228.8
(-3)
A 		1498
B 1520.1
(2)
P 		1616.1
(2.4)
P 		1761.2
(3)
P 		325.4
(-3)
P 		1436
C 1316
(2.1)
P 		1489.7
(3)
P 		1464.4
(2.9)
P 		314
(-3)
P 		1176
avr 1374.5
(1.9) 		1611
(3) 		1615.2
(3) 		289.4
(-3) 		1326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 976.3
(2.6)
P 		784.6
(-0.1)
P 		1003.3
(3)
P 		650
(-2.1)
P 		721.8
(-1)
P 		583.8
(-3)
P 		420
B 899.1
(0.7)
P 		729.3
(-1.6)
P 		1066.5
(3)
P 		877.1
(0.4)
P 		744.4
(-1.4)
P 		622.3
(-3)
P 		444
C 819.7
(0.2)
P 		771.2
(-0.6)
P 		981.7
(3)
P 		765.8
(-0.7)
P 		649.4
(-2.8)
P 		635.2
(-3)
P 		347
avr 898.4
(1.2) 		761.7
(-0.8) 		1017.2
(3) 		764.3
(-0.8) 		705.2
(-1.6) 		613.8
(-3) 		403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 477
1 2 3 4 range
A 468.8
(3)
P 		374.9
(1.7)
P 		423.5
(2.4)
P 		33.5
(-3)
A 		435
B 484.7
(3)
P 		399.1
(1.8)
P 		408.1
(1.9)
P 		69.3
(-3)
P 		415
C 435.6
(2)
P 		428.3
(1.9)
P 		510.4
(3)
P 		52.9
(-3)
P 		458
avr 463
(3) 		400.8
(2.1) 		447.3
(2.8) 		51.9
(-3) 		411

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 180
(-1.3)
P 		279
(3)
P 		218.5
(0.3)
P 		164.9
(-2)
P 		217.8
(0.3)
P 		142.1
(-3)
P 		137
B 312.8
(3)
P 		242.8
(-2.2)
P 		259
(-1)
P 		232.3
(-3)
P 		302.4
(2.2)
P 		232.1
(-3)
P 		81
C 303.8
(3)
P 		235.3
(0.3)
P 		249.9
(0.8)
P 		154
(-3)
P 		210.1
(-0.8)
P 		212.6
(-0.7)
P 		150
avr 265.5
(3) 		252.4
(2) 		242.5
(1.3) 		183.7
(-3) 		243.4
(1.4) 		195.6
(-2.1) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193673_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14390
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.13 NCBI
Target Description Y43F8C.13 /REP_DB=WormBase Gene ID /WP=CE21911 /TR=Q9XWN7 /GB=CAA21614.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Inosine-uridine preferring nucleoside hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075412 NCBI Caenorhabditis elegans Y43F8C.13 (Y43F8C.13) mRNA, complete cds. 11/11 None
SNAP00000039617 ENSEMBL cdna:SNAP chromosome:CEL140:V:19691986:19704962:-1 11/11 None
GENEFINDER00000039629 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19691986:19695384:-1 11/11 None
Y43F8C.13 ENSEMBL cdna:known chromosome:CEL140:V:19691485:19695396:-1 gene:Y43F8C.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19691985-19695384(-) 100.0 100.0
Public Domain and Genome References
Gene Title Inosine-uridine preferring nucleoside hydrolase
Ensembl Y43F8C.13
Entrez Gene 180290 Entrez gene
SwissProt Q9XWN7 EMBL-EBI
WormBase CE21911 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637835_AT dm
DROSGENOME1:145025_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA21614 Hypothetical protein Y43F8C.13 [Caenorhabditis elegans] ref|NP_507813.1| Y43F8C.13 [Caenorhabditis elegans] 0.0
blast CAE56019 Hypothetical protein CBG23577 [Caenorhabditis briggsae] 1.0E-175
blast AAN65330 Hypothetical protein F13H8.3 [Caenorhabditis elegans] ref|NP_495254.2| F13H8.3 [Caenorhabditis elegans] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001910 EMBL-EBI Inosine/uridine-preferring nucleoside hydrolase 1.0E-55
Pfam IPR001910 EMBL-EBI Inosine/uridine-preferring nucleoside hydrolase 1.0E-55
Sequence
Target Sequence 
>C. ELEGANS:193673_S_AT
attgctctccaactctgcgaggagttttcgacgtacccatcccggctggtaatcatggga
ggaaattattacgcggtcggaaatgttgatggaggttcctcagccgagtacaacttccac
ggagacccggaagccgcgagcattgtgctccgacgtatgaagtgtcccatcaccattgtt
ccatgggaggcattctattttgaatcaaagacccatgatgcttcagttgatttttcggct
catttgaagtatggaaccccattggctaattacttatcgctggccaccagcattggccgc
gtaaaatgcgaggccaacggccgccaatactcctactgcgacgagatcgctgtggctact
gcaatcgatgaggataaaattgcaaaaaagtctcagtacctgtatgtcgatgtagagctg
aatggaacaaagacacgtgggcaggttgtggttgattggaccgagcaactgtggtcgaat
gaggaagctccgaatcagcacacccatcgccgtgtcaaattcgtcacctcttacgacgtt
cat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTCTCCAACTCTGCGAGGAGT 326 7 433 Antisense
TGCGAGGAGTTTTCGACGTACCCAT 435 583 448 Antisense
CCTCAGCCGAGTACAACTTCCACGG 304 267 530 Antisense
CGGAAGCCGCGAGCATTGTGCTCCG 332 243 560 Antisense
ATGAAGTGTCCCATCACCATTGTTC 512 43 589 Antisense
GAACCCCATTGGCTAATTACTTATC 170 1 686 Antisense
TTATCGCTGGCCACCAGCATTGGCC 273 679 706 Antisense
AATACTCCTACTGCGACGAGATCGC 241 173 758 Antisense
AGATCGCTGTGGCTACTGCAATCGA 505 67 776 Antisense
CATCGCCGTGTCAAATTCGTCACCT 191 211 937 Antisense
ATTCGTCACCTCTTACGACGTTCAT 138 9 951 Antisense
Sequence Source Affymetrix Proprietary Database