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[193671_at]

Description ZK662.3 /REP_DB=WormBase Gene ID /WP=CE18456 /GEN=nhr-48 /TR=SW:Q94407 /GB=CAB01900.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 59      4grp_high_8_8 > 35      6grp_highest_nonorm > 81      6grp_total > 38      4grp_total > 45      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 362.2
(3)
P
328.9
(1.6)
M
245.5
(-1.9)
A
220.5
(-3)
P
142
B 330.7
(3)
P
325.1
(2.2)
P
288.9
(-3)
P
293
(-2.4)
P
42
C 411
(3)
P
350.3
(1.2)
P
205.2
(-3)
P
247.8
(-1.8)
P
206
avr 368
(3)
334.8
(1.4)
246.5
(-3)
253.8
(-2.6)
122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 254.4
(-3)
P
328.6
(3)
P
269.7
(-1.8)
P
284.5
(-0.6)
P
303.6
(1)
P
298.8
(0.6)
P
74
B 288.6
(-0.1)
P
321.7
(3)
P
294
(0.4)
P
285.5
(-0.4)
P
258
(-3)
P
260.2
(-2.8)
P
64
C 331.3
(3)
P
297.8
(1.3)
P
238.3
(-1.8)
P
214.8
(-3)
P
316.1
(2.2)
P
327
(2.8)
P
117
avr 291.4
(0.3)
316
(3)
267.3
(-2.4)
261.6
(-3)
292.6
(0.4)
295.3
(0.7)
54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 131.9
(3)
P
71.4
(-0.6)
M
64.2
(-1.1)
A
32.3
(-3)
P
100
B 105.5
(3)
P
80.3
(-0.5)
P
67
(-2.4)
P
62.4
(-3)
P
43
C 136.1
(3)
P
100.7
(0.7)
P
71.5
(-1.1)
P
41.8
(-3)
P
94
avr 124.5
(3)
84.1
(-0.1)
67.6
(-1.3)
45.5
(-3)
79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 46.9
(-3)
P
116.9
(3)
P
58.7
(-2)
P
72.1
(-0.8)
P
91.6
(0.8)
P
72.7
(-0.8)
P
70
B 100.4
(1.9)
P
107.1
(3)
P
71.4
(-3)
P
75.6
(-2.3)
P
104.8
(2.6)
P
97
(1.3)
P
36
C 122.8
(3)
P
90.9
(0.6)
P
60.7
(-1.7)
P
43.2
(-3)
P
102.3
(1.5)
P
109.5
(2)
P
80
avr 90
(0.8)
105
(3)
63.6
(-3)
63.6
(-3)
99.6
(2.2)
93.1
(1.3)
41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17818
Sequence Type Exemplar sequence
Representative Public ID ZK662.3 NCBI
Target Description ZK662.3 /REP_DB=WormBase Gene ID /WP=CE18456 /GEN=nhr-48 /TR=SW:Q94407 /GB=CAB01900.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029828(11), NM_001029827(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_001029828 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-48) (nhr-48) mRNA, complete cds. 11/11 None
NM_001029827 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-48) (nhr-48) mRNA, complete cds. 11/11 None
GENEFINDER00000025421 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15709995:15716150:1 11/11 None
SNAP00000025416 ENSEMBL cdna:SNAP chromosome:CEL140:X:15714499:15716150:1 11/11 None
ZK662.3b ENSEMBL cdna:known chromosome:CEL140:X:15708139:15716787:1 gene:ZK662.3 11/11 None
ZK662.3a ENSEMBL cdna:known chromosome:CEL140:X:15708139:15716785:1 gene:ZK662.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15709994-15716150(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK662.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD36502 Hypothetical protein ZK662.3b [Caenorhabditis elegans] ref|NP_001024999.1| Nuclear Hormone Receptor family member (nhr-48) [Caenorhabditis elegans] gb|AAK17976.1| nuclear receptor NHR-48 [Caenorhabditis elegans] 0.0
blast CAB01900 Hypothetical protein ZK662.3a [Caenorhabditis elegans] ref|NP_001024998.1| Nuclear Hormone Receptor family member (nhr-48) [Caenorhabditis elegans] sp|Q94407|NHR48_CAEEL Nuclear hormone receptor family member nhr-48 0.0
blast CAE63355 Hypothetical protein CBG07759 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.4E-32
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.4E-25
Sequence
Target Sequence
>C. ELEGANS:193671_AT
tggccttttcaactactgcgttgtcaaatggatgcaacacaaggaaagtatgtctataga
tggactgagtgatgctgctcgcagagattttatgaatatcattcgccgagaagagttcaa
ctaccgagtgcagccaggagcatttaacacacttgcgatcagtgtgctcttccacagcat
ttctgacaacctcatttctacagatgtttatatggaacatttggttttcaaaaaactact
tgacaaaaatcttcccatcaaagtgtccagcgacactgtctacaataattactatccgta
catcatcaaagccgccaaacatctcgaa


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TGGCCTTTTCAACTACTGCGTTGTC 684 543 1977 Antisense
TGGACTGAGTGATGCTGCTCGCAGA 238 549 2037 Antisense
AGAGTTCAACTACCGAGTGCAGCCA 353 67 2088 Antisense
GCAGCCAGGAGCATTTAACACACTT 489 313 2106 Antisense
CACTTGCGATCAGTGTGCTCTTCCA 270 197 2126 Antisense
GCTCTTCCACAGCATTTCTGACAAC 99 301 2142 Antisense
GACAACCTCATTTCTACAGATGTTT 617 365 2161 Antisense
AAATCTTCCCATCAAAGTGTCCAGC 67 119 2223 Antisense
GTGTCCAGCGACACTGTCTACAATA 437 487 2239 Antisense
TTACTATCCGTACATCATCAAAGCC 363 683 2265 Antisense
CATCAAAGCCGCCAAACATCTCGAA 54 213 2280 Antisense
Sequence Source Affymetrix Proprietary Database