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[193667_at] Peptidyl-prolyl cis-trans isomerases

Description Y17G7B.9 /REP_DB=WormBase Gene ID /WP=CE19042 /GEN=cyp-16 /TR=Q9XXI7 /GB=CAA19454.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Peptidyl-prolyl cis-trans isomerases
Cluster 6grp_total > 55      4grp_total > 07      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 66.9
(1.6)
P 		42.3
(-3)
A 		50.8
(-1.4)
M 		74.6
(3)
A 		32
B 61.9
(-1.3)
P 		54
(-3)
A 		59.4
(-1.8)
P 		81.3
(3)
P 		27
C 91.4
(3)
P 		49.7
(-3)
A 		60.9
(-1.4)
P 		76.6
(0.9)
P 		42
avr 73.4
(2.1) 		48.7
(-3) 		57
(-1.3) 		77.5
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 55.8
(-1.1)
A 		54.8
(-1.2)
P 		50.5
(-1.7)
A 		39.3
(-3)
A 		50.7
(-1.7)
A 		91.4
(3)
A 		52
B 43.8
(-2.6)
A 		62.9
(-0.9)
A 		107.2
(3)
P 		55.2
(-1.6)
P 		39.5
(-3)
A 		65.3
(-0.7)
P 		68
C 46.2
(-3)
P 		62.5
(-0.4)
P 		78.3
(2)
A 		59.9
(-0.9)
A 		50.4
(-2.3)
M 		84.5
(3)
P 		38
avr 48.6
(-2.7) 		60.1
(-0.6) 		78.7
(2.7) 		51.5
(-2.2) 		46.9
(-3) 		80.4
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 24.3
(3)
P 		9.2
(-3)
A 		13.3
(-1.4)
M 		10.9
(-2.3)
A 		15
B 19.7
(3)
P 		13.3
(-3)
A 		13.8
(-2.5)
P 		17.3
(0.8)
P 		6
C 30.2
(3)
P 		14.3
(-2.5)
A 		21.2
(-0.1)
P 		12.9
(-3)
P 		17
avr 24.7
(3) 		12.3
(-3) 		16.1
(-1.2) 		13.7
(-2.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.3
(-2.9)
A 		19.5
(1.6)
P 		11
(-2.5)
A 		10
(-3)
A 		15.3
(-0.4)
A 		22.3
(3)
A 		12
B 15.2
(-2.7)
A 		20.9
(0.3)
A 		26
(3)
P 		14.6
(-3)
P 		16
(-2.3)
A 		24.4
(2.2)
P 		11
C 17.1
(-1.1)
P 		19.1
(-0.4)
P 		19.9
(-0.1)
A 		12
(-3)
A 		16.3
(-1.4)
M 		28.3
(3)
P 		16
avr 14.2
(-2.1) 		19.8
(0.6) 		19
(0.2) 		12.2
(-3) 		15.9
(-1.3) 		25
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3161
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.9 NCBI
Target Description Y17G7B.9 /REP_DB=WormBase Gene ID /WP=CE19042 /GEN=cyp-16 /TR=Q9XXI7 /GB=CAA19454.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Peptidyl-prolyl cis-trans isomerases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064161 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-16) (cyn-16) mRNA, complete cds. 11/11 None
SNAP00000030320 ENSEMBL cdna:SNAP chromosome:CEL140:II:12019225:12036638:-1 11/11 None
GENEFINDER00000030405 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12028814:12036638:-1 11/11 None
Y17G7B.9 ENSEMBL cdna:known chromosome:CEL140:II:12028666:12036638:-1 gene:Y17G7B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12033733-12036635(-) 100.0 100.0
Public Domain and Genome References
Gene Title Peptidyl-prolyl cis-trans isomerases
Gene Symbol cyn-16
Ensembl Y17G7B.9
Entrez Gene 174843 Entrez gene
SwissProt Q9XXI7 EMBL-EBI
WormBase CE37939 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253415_AT peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein at
CANINE:1592117_AT similar to serologically defined colon cancer antigen 10 cfa
CANINE:1590488_AT similar to serologically defined colon cancer antigen 10 cfa
CANINE_2:CFA.11169.1.A1_AT similar to serologically defined colon cancer antigen 10 cfa
CANINE_2:CFA.9657.1.A1_AT similar to serologically defined colon cancer antigen 10 cfa
CANINE_2:CFAAFFX.11815.1.S1_AT similar to serologically defined colon cancer antigen 10 cfa
DROSOPHILA_2:1631971_AT dm
DROSGENOME1:148604_AT dm
CHICKEN:GGA.12941.1.S1_AT serologically defined colon cancer antigen 10 gga
HG-U133_PLUS_2:223337_AT serologically defined colon cancer antigen 10 hs
HG-U133B:223337_AT serologically defined colon cancer antigen 10 hs
HU35KSUBA:RC_AA412036_AT serologically defined colon cancer antigen 10 hs
U133_X3P:G3170185_3P_AT serologically defined colon cancer antigen 10 hs
U133_X3P:HS2.237569.1.S1_3P_AT serologically defined colon cancer antigen 10 hs
U133_X3P:HS2.23557.2.S1_3P_S_AT serologically defined colon cancer antigen 10 hs
HG-U133_PLUS_2:1555495_A_AT serologically defined colon cancer antigen 10 hs
HG-U133_PLUS_2:1558841_AT serologically defined colon cancer antigen 10 hs
HG-U95B:43447_AT serologically defined colon cancer antigen 10 hs
HG-U95E:72618_AT serologically defined colon cancer antigen 10 hs
HG-U95E:80300_AT serologically defined colon cancer antigen 10 hs
HU35KSUBD:RC_AA521412_AT Serologically defined colon cancer antigen 10 hs
HG-U133_PLUS_2:241106_AT Serologically defined colon cancer antigen 10 hs
HG-U133B:241106_AT Serologically defined colon cancer antigen 10 hs
HG-U95C:63182_AT Serologically defined colon cancer antigen 10 hs
HG-U95D:72519_AT Serologically defined colon cancer antigen 10 hs
HG-U95E:80508_AT Serologically defined colon cancer antigen 10 hs
HG-U95E:86813_AT Serologically defined colon cancer antigen 10 hs
U133_X3P:HS.222065.0.A1_3P_AT Serologically defined colon cancer antigen 10 hs
MOE430A:1426455_AT serologically defined colon cancer antigen 10 mm
MOUSE430A_2:1426455_AT serologically defined colon cancer antigen 10 mm
MOUSE430_2:1426455_AT serologically defined colon cancer antigen 10 mm
MG-U74CV2:168029_AT serologically defined colon cancer antigen 10 mm
MOE430B:1459411_AT Serologically defined colon cancer antigen 10, mRNA (cDNA clone MGC:29160 IMAGE:5025084) mm
MOUSE430_2:1459411_AT Serologically defined colon cancer antigen 10, mRNA (cDNA clone MGC:29160 IMAGE:5025084) mm
RAE230A:1374738_AT serologically defined colon cancer antigen 10 (predicted) rn
RAT230_2:1374738_AT serologically defined colon cancer antigen 10 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19454 Hypothetical protein Y17G7B.9 [Caenorhabditis elegans] ref|NP_496562.3| CYclophyliN family member (cyn-16) [Caenorhabditis elegans] 0.0
blast CAE73547 Hypothetical protein CBG21016 [Caenorhabditis briggsae] 0.0
blast AAM19304 cyclophilin-16 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 4.2E-43
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 4.2E-43
Sequence
Target Sequence 
>C. ELEGANS:193667_AT
aaccactgccggagacattgaaattgagctttggacgaaggaagctccactagcatgcag
aaatttcatccagctttgcatggaaaattattacaagggaactgtatttcatcggcttgt
caaaaatttcattctccagggtggagaccctacggcaaccggaaccggcggagagagcat
ctatggaaaaccatttaaggatgaaatccaccaacgtctaaaattcaaccgccgcggaat
tgttggaatggcaaatgctggacgagacgacaacggttcccaattcttcttcacaatcgg
tgatcgcggagctccagagctcgacaaaaagcacacaatcttcggaaaagtgaccggacc
cacacttttcaatatgcttaaaatcacagaagttgagactgaaggcgatcgaccagtgac
atttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCACTGCCGGAGACATTGAAATT 571 147 66 Antisense
GAAGGAAGCTCCACTAGCATGCAGA 707 333 102 Antisense
GCAGAAATTTCATCCAGCTTTGCAT 411 313 122 Antisense
TCTCCAGGGTGGAGACCCTACGGCA 663 413 198 Antisense
GAACCGGCGGAGAGAGCATCTATGG 653 345 227 Antisense
AGGATGAAATCCACCAACGTCTAAA 611 53 263 Antisense
GTCTAAAATTCAACCGCCGCGGAAT 386 451 281 Antisense
TGGACGAGACGACAACGGTTCCCAA 276 547 324 Antisense
CCCAATTCTTCTTCACAATCGGTGA 395 255 344 Antisense
GATCGCGGAGCTCCAGAGCTCGACA 574 417 367 Antisense
GAAGGCGATCGACCAGTGACATTTT 442 333 466 Antisense
Sequence Source Affymetrix Proprietary Database