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[193661_at]

Description K01A11.3 /REP_DB=WormBase Gene ID /WP=CE03451 /TR=Q18422 /GB=CAA91345.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ubiquitin carboxyl-terminal hydrolases family 2
Cluster 6grp_total > 53      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.8
(-3)
A 		6.9
(-0.5)
A 		3.7
(-2.1)
A 		14.2
(3)
A 		12
B 4.1
(-1)
A 		7.6
(3)
A 		3.2
(-2)
A 		2.3
(-3)
A 		5
C 3.5
(-3)
A 		8
(3)
A 		6.1
(0.5)
A 		4.5
(-1.7)
A 		5
avr 3.1
(-3) 		7.5
(3) 		4.3
(-1.4) 		7
(2.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 4.4
(3)
A 		3.2
(-0.1)
A 		2.7
(-1.4)
A 		3.2
(-0.1)
A 		2.1
(-3)
A 		3.4
(0.4)
A 		2
B 2.3
(-2.6)
A 		2.4
(-2.4)
A 		6.2
(3)
A 		2
(-3)
A 		4.6
(0.7)
A 		4
(-0.1)
A 		4
C 1.9
(-2.7)
A 		1.8
(-2.9)
A 		5.7
(3)
A 		3.1
(-0.9)
A 		2
(-2.6)
A 		1.7
(-3)
A 		4
avr 2.9
(-2) 		2.5
(-3) 		4.9
(3) 		2.8
(-2.3) 		2.9
(-2) 		3
(-1.8) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(-3)
A 		1.5
(0.4)
A 		1
(-1.7)
A 		2.1
(3)
A 		1
B 1.3
(0.4)
A 		1.9
(3)
A 		0.7
(-2.1)
A 		0.5
(-3)
A 		1
C 1.1
(-1.8)
A 		2.3
(3)
A 		2.1
(2.2)
A 		0.8
(-3)
A 		2
avr 1
(-3) 		1.9
(3) 		1.3
(-1) 		1.1
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(-0.6)
A 		1.1
(3)
A 		0.6
(-3)
A 		0.8
(-0.6)
A 		0.6
(-3)
A 		0.8
(-0.6)
A 		1
B 0.8
(-1.6)
A 		0.8
(-1.6)
A 		1.5
(1.6)
A 		0.5
(-3)
A 		1.8
(3)
A 		1.5
(1.6)
A 		1
C 0.7
(-1.8)
A 		0.5
(-3)
A 		1.5
(3)
A 		0.6
(-2.4)
A 		0.6
(-2.4)
A 		0.6
(-2.4)
A 		1
avr 0.8
(-1) 		0.8
(-1) 		1.2
(3) 		0.6
(-3) 		1
(1) 		1
(1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8042
Sequence Type Exemplar sequence
Representative Public ID K01A11.3 NCBI
Target Description K01A11.3 /REP_DB=WormBase Gene ID /WP=CE03451 /TR=Q18422 /GB=CAA91345.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ubiquitin carboxyl-terminal hydrolases family 2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065309 NCBI Caenorhabditis elegans K01A11.3 (K01A11.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000013906 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3445968:3452081:-1 10/11 None
SNAP00000013903 ENSEMBL cdna:SNAP chromosome:CEL140:III:3446491:3448781:-1 10/11 None
K01A11.3 ENSEMBL cdna:known chromosome:CEL140:III:3447125:3452006:-1 gene:K01A11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3447124-3452535(-) 35.21 99.96
Public Domain and Genome References
Gene Title
Ensembl K01A11.3
Entrez Gene 175447 Entrez gene
SwissProt Q18422 EMBL-EBI
WormBase CE36443 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490918 Y20F4.4 [Caenorhabditis elegans] gb|AAL00866.2| Hypothetical protein Y20F4.4 [Caenorhabditis elegans] 0.0
blast CAH10807 Hypothetical protein K01A11.5 [Caenorhabditis elegans] ref|NP_001022648.1| K01A11.5 [Caenorhabditis elegans] 0.0
blast CAA16331 Hypothetical protein Y43F4B.2 [Caenorhabditis elegans] ref|NP_499739.1| Y43F4B.2 [Caenorhabditis elegans] 0.0
blast CAA91345 Hypothetical protein K01A11.3 [Caenorhabditis elegans] ref|NP_497710.2| K01A11.3 [Caenorhabditis elegans] 1.0E-146
blast CAA91345 Hypothetical protein K01A11.3 [Caenorhabditis elegans] ref|NP_497710.2| K01A11.3 [Caenorhabditis elegans] 1.0E-102
blast NP_490918 Y20F4.4 [Caenorhabditis elegans] gb|AAL00866.2| Hypothetical protein Y20F4.4 [Caenorhabditis elegans] 4.0E-23
blast CAH10807 Hypothetical protein K01A11.5 [Caenorhabditis elegans] ref|NP_001022648.1| K01A11.5 [Caenorhabditis elegans] 1.0E-21
blast CAA82935 Hypothetical protein F40F12.3 [Caenorhabditis elegans] ref|NP_499200.1| F40F12.3 [Caenorhabditis elegans] pir||S42832 F40F12.3 protein - Caenorhabditis elegans 1.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 2.5E-5
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.1E-9
Sequence
Target Sequence 
>C. ELEGANS:193661_AT
ggacctctcgactgaatgtggtgcccgccacgaaccactttgctcaatgttcagctacca
actgatctcaacgctcaagggttacaccggaggctgcggagaataccagctgtccataga
gaaacgaacctcttgcttggaatacacactgggcaagaggagaacattcttagacgtagt
agcgagtaaagagcagaagtgcctgaaaaagcacacagtcgagggtgactttctgggaca
aagggaatggcgggtcgagctaaaaaattcgaagttcctattggtgaacatccgcagaag
gccgggccaggacacggggttgttggacccaagagagccaaacatttttctggggaacaa
gttgaagcttgtcggattcgttgaagtggagatgtgtggtggtggcgagtatcatgcaat
ctcttggactcgtcatggagactactggacgcgacacaacgacgataaagaaaccgaaat
ctacgagcacccaattaactggacagccatgaccatcgggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCTCTCGACTGAATGTGGTGCC 72 523 1908 Antisense
GAACCACTTTGCTCAATGTTCAGCT 498 345 1939 Antisense
CAGCTACCAACTGATCTCAACGCTC 673 203 1959 Antisense
GCTCAAGGGTTACACCGGAGGCTGC 154 297 1980 Antisense
GGCTGCGGAGAATACCAGCTGTCCA 159 541 1999 Antisense
GAACCTCTTGCTTGGAATACACACT 499 345 2033 Antisense
CGCAGAAGGCCGGGCCAGGACACGG 167 255 2200 Antisense
TCATGCAATCTCTTGGACTCGTCAT 199 623 2319 Antisense
AGACTACTGGACGCGACACAACGAC 410 67 2346 Antisense
GAAACCGAAATCTACGAGCACCCAA 89 359 2377 Antisense
ACTGGACAGCCATGACCATCGGGCA 30 97 2405 Antisense
Sequence Source Affymetrix Proprietary Database