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[193660_at] CUB domain, von Willebrand factor type A domain

Description R10H10.3 /REP_DB=WormBase Gene ID /WP=CE06294 /TR=Q21916 /GB=CAA94611.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=CUB domain, von Willebrand factor type A domain
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 21      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 15      6grp_total > 31      4grp_total > 52      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5548
1 2 3 4 range
A 5644.2
(3)
P 		4994.4
(2.3)
P 		4483.2
(1.7)
P 		100.2
(-3)
P 		5544
B 5329
(3)
P 		5348.2
(3)
P 		4047.6
(1.5)
P 		188.2
(-3)
P 		5160
C 5648.6
(3)
P 		5325.4
(2.6)
P 		5193.8
(2.5)
P 		193.9
(-3)
P 		5455
avr 5540.6
(3) 		5222.7
(2.6) 		4574.9
(1.9) 		160.8
(-3) 		5380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6062
1 2 3 4 5 6 range
A 4979.7
(0.6)
P 		5284.8
(1)
P 		6851.8
(3)
P 		5218.6
(0.9)
P 		3191.4
(-1.7)
P 		2173.3
(-3)
P 		4679
B 6294.7
(0.9)
P 		6284.7
(0.9)
P 		8235.4
(3)
P 		4948.8
(-0.6)
P 		3404.7
(-2.2)
P 		2702.2
(-3)
P 		5533
C 4944.4
(0.8)
P 		6052.2
(3)
P 		5550.6
(2)
P 		5887.2
(2.7)
P 		3225.9
(-2.6)
P 		3023.4
(-3)
P 		3029
avr 5406.3
(0.9) 		5873.9
(1.6) 		6879.3
(3) 		5351.5
(0.8) 		3274
(-2.1) 		2633
(-3) 		4246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2040
1 2 3 4 range
A 2055
(3)
P 		1084.1
(0.1)
P 		1172
(0.4)
P 		14.7
(-3)
P 		2040
B 1699.4
(3)
P 		1320.9
(1.6)
P 		937.9
(0.2)
P 		40.1
(-3)
P 		1659
C 1869.8
(3)
P 		1531.1
(1.9)
P 		1810.2
(2.8)
P 		32.7
(-3)
P 		1837
avr 1874.7
(3) 		1312
(1.2) 		1306.7
(1.2) 		29.2
(-3) 		1846

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1661
1 2 3 4 5 6 range
A 918
(-1.3)
P 		1879.5
(3)
P 		1492.2
(1.3)
P 		1323.5
(0.5)
P 		963
(-1.1)
P 		529.1
(-3)
P 		1350
B 2190.3
(3)
P 		2091.9
(2.5)
P 		1999.8
(2)
P 		1310.8
(-1.5)
P 		1383.3
(-1.1)
P 		1007.6
(-3)
P 		1183
C 1832.7
(2.9)
P 		1846.7
(3)
P 		1412.7
(-0.1)
P 		1183.9
(-1.8)
P 		1043.9
(-2.8)
P 		1012.1
(-3)
P 		835
avr 1647
(1.4) 		1939.4
(3) 		1634.9
(1.3) 		1272.7
(-0.7) 		1130.1
(-1.5) 		849.6
(-3) 		1090
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9890
Sequence Type Exemplar sequence
Representative Public ID R10H10.3 NCBI
Target Description R10H10.3 /REP_DB=WormBase Gene ID /WP=CE06294 /TR=Q21916 /GB=CAA94611.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=CUB domain, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069517 NCBI Caenorhabditis elegans R10H10.3 (R10H10.3) mRNA, complete cds. 11/11 None
SNAP00000020331 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10391747:10393208:1 11/11 None
GENEFINDER00000020342 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10391938:10393208:1 11/11 None
R10H10.3 ENSEMBL cdna:known chromosome:CEL140:IV:10388465:10393266:1 gene:R10H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10388497-10393214(+) 100.0 100.0
Public Domain and Genome References
Gene Title CUB domain, von Willebrand factor type A domain
Ensembl R10H10.3
Entrez Gene 177930 Entrez gene
SwissProt Q21916 EMBL-EBI
WormBase CE06294 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94611 Hypothetical protein R10H10.3 [Caenorhabditis elegans] ref|NP_501918.1| R10H10.3 [Caenorhabditis elegans] 0.0
blast CAE63829 Hypothetical protein CBG08382 [Caenorhabditis briggsae] 1.0E-165
blast CAA94611 Hypothetical protein R10H10.3 [Caenorhabditis elegans] ref|NP_501918.1| R10H10.3 [Caenorhabditis elegans] 1.0E-144
blast CAA94611 Hypothetical protein R10H10.3 [Caenorhabditis elegans] ref|NP_501918.1| R10H10.3 [Caenorhabditis elegans] 1.0E-143
blast CAE63829 Hypothetical protein CBG08382 [Caenorhabditis briggsae] 1.0E-124
blast CAE63829 Hypothetical protein CBG08382 [Caenorhabditis briggsae] 1.0E-123
blast AAB60234 putative polypeptide, similar to enteropeptidase, PIR Accession Number A53663, enterokinase encoded by GenBank Accession Number U09859, and bone morphogenetic protein encoded by GenBank Accession Number L24755 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 9.8E-19
Sequence
Target Sequence 
>C. ELEGANS:193660_AT
cgtggcaccatgtaaccgtgacatattcctgattgtaaatgggttagccaacgttggatc
ccaggcaaattaccaaaaagaaatcaattttatcgccaatcaattgacaccaacttggaa
tgtcggacttgataaagttagagttatgctcaaccttcagacagacattgattatgcaat
tgtttggtcagctgatgatgttccatcaaatgccaatgttacacaagaagttctaaatat
gttggaatatgttccagatgttacaacagacaataacatggatcttgaatgtcttttccg
ttatgcttttgacggtcttgatgatagtaaagaattcgatgaaagatatggaatcgaaaa
ggttgtcatcatttttgtggctgccaatgcaaataacgatcaagattacaatgaatcatt
cgagtttgctcataaaattcgaacagaacaagatgctaaggtgatcgttgttggtatggg
atcaggacttgatcaaactcgcttgtctaaactcgcatatgcctctggatatgctttctt
ttcgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGCACCATGTAACCGTGACATA 480 243 480 Antisense
GTTAGCCAACGTTGGATCCCAGGCA 573 441 522 Antisense
ATCGCCAATCAATTGACACCAACTT 694 35 571 Antisense
GTTATGCTCAACCTTCAGACAGACA 437 447 622 Antisense
GTTTGGTCAGCTGATGATGTTCCAT 701 451 661 Antisense
AATGTCTTTTCCGTTATGCTTTTGA 642 163 767 Antisense
GTCATCATTTTTGTGGCTGCCAATG 598 467 844 Antisense
ATCAGGACTTGATCAAACTCGCTTG 570 29 960 Antisense
AACTCGCTTGTCTAAACTCGCATAT 636 141 975 Antisense
TAAACTCGCATATGCCTCTGGATAT 370 641 987 Antisense
CTCTGGATATGCTTTCTTTTCGACC 58 233 1002 Antisense
Sequence Source Affymetrix Proprietary Database