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[193654_at] N-methyl-D-aspartate receptor associated protein

Description F40F9.2 /REP_DB=WormBase Gene ID /WP=CE05851 /TR=Q20241 /GB=CAA94766.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=N-methyl-D-aspartate receptor associated protein
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 0      6grp_total > 04      4grp_total > 06      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 735
1 2 3 4 range
A 1647.9
(2.2)
P 		1102
(-3)
P 		1337.5
(-0.8)
P 		1737.8
(3)
P 		636
B 1293.2
(-2.7)
P 		1341.7
(-2)
P 		1268.1
(-3)
P 		1712.3
(3)
P 		444
C 1736.8
(2)
P 		1233.9
(-3)
P 		1464.8
(-0.7)
P 		1837.1
(3)
P 		603
avr 1559.3
(0.7) 		1225.9
(-3) 		1356.8
(-1.5) 		1762.4
(3) 		537

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1555
1 2 3 4 5 6 range
A 2533
(3)
P 		1396.3
(-1.4)
P 		1507.3
(-1)
P 		1511.7
(-0.9)
P 		1511.2
(-0.9)
P 		977.9
(-3)
P 		1555
B 1897.7
(3)
P 		1879.8
(2.8)
P 		1389
(-1.8)
P 		1823.7
(2.3)
P 		1658.7
(0.7)
P 		1266
(-3)
P 		632
C 1686.7
(3)
P 		1648.9
(2.6)
P 		1093.9
(-3)
P 		1684.8
(3)
P 		1266.3
(-1.3)
P 		1560.6
(1.7)
P 		593
avr 2039.1
(3) 		1641.7
(-0.1) 		1330.1
(-2.5) 		1673.4
(0.2) 		1478.7
(-1.4) 		1268.2
(-3) 		771
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 600
(3)
P 		239.2
(-3)
P 		349.7
(-1.2)
P 		254.4
(-2.7)
P 		361
B 412.4
(3)
P 		331.4
(-1.1)
P 		293.9
(-3)
P 		364.9
(0.6)
P 		119
C 574.9
(3)
P 		354.8
(-2)
P 		510.5
(1.5)
P 		309.8
(-3)
P 		265
avr 529.1
(3) 		308.5
(-3) 		384.7
(-0.9) 		309.7
(-3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 466.9
(2.3)
P 		496.6
(3)
P 		328.3
(-0.9)
P 		383.4
(0.4)
P 		456
(2.1)
P 		238.1
(-3)
P 		259
B 660.3
(2.8)
P 		625.7
(2.1)
P 		337.3
(-3)
P 		483
(-0.4)
P 		673.9
(3)
P 		472.1
(-0.6)
P 		337
C 625.2
(3)
P 		503.1
(0.9)
P 		278.4
(-3)
P 		338.8
(-2)
P 		409.7
(-0.7)
P 		522.4
(1.2)
P 		347
avr 584.1
(3) 		541.8
(2.1) 		314.7
(-3) 		401.7
(-1.1) 		513.2
(1.4) 		410.9
(-0.9) 		269
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12253
Sequence Type Exemplar sequence
Representative Public ID F40F9.2 NCBI
Target Description F40F9.2 /REP_DB=WormBase Gene ID /WP=CE05851 /TR=Q20241 /GB=CAA94766.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=N-methyl-D-aspartate receptor associated protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073100 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-120) (tag-120) mRNA, complete cds. 11/11 None
SNAP00000009250 ENSEMBL cdna:SNAP chromosome:CEL140:V:9710439:9712388:-1 11/11 None
GENEFINDER00000009269 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9710439:9712388:-1 11/11 None
F40F9.2 ENSEMBL cdna:known chromosome:CEL140:V:9709185:9712396:-1 gene:F40F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9710438-9712388(-) 100.0 100.0
Public Domain and Genome References
Gene Title N-methyl-D-aspartate receptor associated protein
Gene Symbol tag-120
Ensembl F40F9.2
Entrez Gene 179362 Entrez gene
SwissProt Q20241 EMBL-EBI
WormBase CE05851 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606112_S_AT similar to glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 cfa
CANINE_2:CFA.1355.1.A1_S_AT similar to glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 cfa
CANINE_2:CFA.1355.1.A1_X_AT similar to glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 cfa
CANINE_2:CFA.17040.1.S1_S_AT similar to glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 cfa
CANINE_2:CFA.19882.1.S1_S_AT similar to glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 cfa
DROSOPHILA_2:1623376_S_AT N-methyl-D-aspartate receptor-associated protein dm
DROSGENOME1:142415_AT N-methyl-D-aspartate receptor-associated protein dm
HG-U95AV2:35798_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
HU35KSUBA:RC_AA292427_S_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
HU35KSUBC:RC_AA070917_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
U133_X3P:HS.101067.2.S1_3P_X_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
U133_X3P:HS.101067.2.S1_3P_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
HG-U133A_2:212090_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
HG-U133_PLUS_2:212090_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
HG-U133A:212090_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
HG-U95B:43061_I_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
HG-U95AV2:32505_AT Glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) hs
MOE430A:1436297_A_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MOUSE430A_2:1436297_A_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MOUSE430_2:1436297_A_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MU11KSUBA:AA018019_S_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MG-U74AV2:99161_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MG-U74AV2:99160_S_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MOE430A:1417423_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MOUSE430A_2:1417423_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MOUSE430_2:1417423_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) mm
MG-U74CV2:171543_I_AT Glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding), mRNA (cDNA clone MGC:46816 IMAGE:5376054) mm
RN-U34:S61973_G_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) rn
RG-U34A:S61973_G_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) rn
RN-U34:S61973_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) rn
RG-U34A:S61973_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) rn
RAE230A:1372724_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) rn
RAT230_2:1372724_AT glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) rn
RAE230A:1374267_AT Glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) rn
RAT230_2:1374267_AT Glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 (glutamate binding) rn
Protein Similarities
Method ID Description E-Value
blast CAA94766 Hypothetical protein F40F9.2 [Caenorhabditis elegans] ref|NP_505501.1| Temporarily Assigned Gene name family member (tag-120) [Caenorhabditis elegans] 1.0E-116
blast CAE72235 Hypothetical protein CBG19350 [Caenorhabditis briggsae] 1.0E-101
blast CAE69438 Hypothetical protein CBG15624 [Caenorhabditis briggsae] 5.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR006214 EMBL-EBI Protein of unknown function UPF0005 9.4E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505501.1 6 35-57,67-89,96-118,153-175,182-204,219-241
F40F9.2 6 35-57,67-89,96-118,153-175,182-204,219-241
SNAP00000009250 6 35-57,67-89,96-118,153-175,182-204,219-241
GENEFINDER00000009269 6 35-57,67-89,96-118,153-175,182-204,219-241
Sequence
Target Sequence 
>C. ELEGANS:193654_AT
tatgtttgccatcacagcagcgttctgtgtaattcctatggtatcagaaccgtttcagga
ttgggttaagaacaacttttgggtatatttcattgcgataattgtatttttggttgttgc
aattgcgttgtcttgctgtggtaatttgagaaggcaatttccagtcaatatcattcttct
cactattttcactctctcggcagcagtcatgacaatgtttgttactgcttgttataatgt
tcaatcagttttaatttgtctatgtatcaccacagtatgcagtggatcagtcattatttt
ctcgatgaaaacgaaatcagatttgacgagcaaaatgggaatcgctttcatgctttcaat
ggttcttttctcatttggaatctttgcactcatcttcactttggcattcaattggcaatt
cctttattccgtttattctggacttgctgctcttttaatgatgttctatttggctattga
tgtacaacttctgatgggtggtcgtaaatatgaattatcaccagaagattacatttttgc
tgcgatggaaatctttttggacattctgaatatcttcctgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTTTGCCATCACAGCAGCGTTC 299 655 135 Antisense
GCAGCGTTCTGTGTAATTCCTATGG 705 313 151 Antisense
AATTGCGTTGTCTTGCTGTGGTAAT 58 179 255 Antisense
TTCCAGTCAATATCATTCTTCTCAC 490 699 293 Antisense
CTCTCTCGGCAGCAGTCATGACAAT 426 231 326 Antisense
ATGGGAATCGCTTTCATGCTTTCAA 422 49 469 Antisense
ATGCTTTCAATGGTTCTTTTCTCAT 45 43 484 Antisense
TGCACTCATCTTCACTTTGGCATTC 220 577 519 Antisense
GCAATTCCTTTATTCCGTTTATTCT 494 323 549 Antisense
TATTCTGGACTTGCTGCTCTTTTAA 648 663 568 Antisense
GGACATTCTGAATATCTTCCTGATG 647 525 693 Antisense
Sequence Source Affymetrix Proprietary Database