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[193651_s_at] O. volvulus 20Kd antigenic peptide

Description F02A9.2 /REP_DB=WormBase Gene ID /WP=CE00133 /GEN=far-1 /TR=SW:P34382 /GB=CAA79616.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=O. volvulus 20Kd antigenic peptide
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 09      6grp_total > 41      4grp_total > 25      6grp_cgc > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14508
1 2 3 4 range
A 22023.1
(-3)
P 		28705.2
(0.1)
P 		29257.4
(0.4)
P 		34860.8
(3)
P 		12838
B 21494.1
(-3)
P 		27480.1
(1.4)
P 		26882.6
(1)
P 		29668
(3)
P 		8174
C 20352.6
(-3)
P 		22626.3
(-1.8)
P 		23697.6
(-1.2)
P 		31580.9
(3)
P 		11228
avr 21289.9
(-3) 		26270.5
(-0.2) 		26612.5
(-0) 		32036.6
(3) 		10747

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21137
1 2 3 4 5 6 range
A 27805.4
(1.9)
P 		25437.6
(0.9)
P 		30345.2
(3)
P 		26802.6
(1.5)
P 		20916.2
(-1)
P 		16259.4
(-3)
P 		14086
B 25780.8
(0.8)
P 		25781.1
(0.8)
P 		33236.4
(3)
P 		26087.9
(0.9)
P 		19165
(-1.2)
P 		13198.1
(-3)
P 		20038
C 25426.7
(0.9)
P 		25696.5
(1)
P 		32550.8
(3)
P 		29446.8
(2.1)
P 		21896.4
(-0.1)
P 		12099.8
(-3)
P 		20451
avr 26337.6
(1.1) 		25638.4
(0.9) 		32044.1
(3) 		27445.8
(1.5) 		20659.2
(-0.8) 		13852.4
(-3) 		18192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3156
1 2 3 4 range
A 8018.6
(3)
P 		6231.1
(-0.7)
P 		7648.4
(2.2)
P 		5102.9
(-3)
P 		2916
B 6854.3
(3)
P 		6787
(2.4)
P 		6229.3
(-3)
P 		6322.3
(-2.1)
P 		625
C 6737.3
(-0.1)
P 		6505.2
(-0.6)
P 		8259.3
(3)
P 		5325
(-3)
P 		2934
avr 7203.4
(2.4) 		6507.8
(0.1) 		7379
(3) 		5583.4
(-3) 		1796

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5466
1 2 3 4 5 6 range
A 5125.7
(-1.6)
P 		9046.9
(3)
P 		6608.6
(0.1)
P 		6797.8
(0.3)
P 		6311.6
(-0.2)
P 		3958.7
(-3)
P 		5088
B 8970.5
(3)
P 		8581.4
(2.4)
P 		8070.8
(1.7)
P 		6909.8
(-0.1)
P 		7786.5
(1.2)
P 		4921.5
(-3)
P 		4049
C 9424.6
(3)
P 		7840.8
(1.2)
P 		8284.7
(1.7)
P 		5921.8
(-0.9)
P 		7085.3
(0.4)
P 		4050.5
(-3)
P 		5374
avr 7840.3
(2.1) 		8489.7
(3) 		7654.7
(1.8) 		6543.1
(0.2) 		7061.1
(0.9) 		4310.2
(-3) 		4180
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193651_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6170
Sequence Type Exemplar sequence
Representative Public ID F02A9.2 NCBI
Target Description F02A9.2 /REP_DB=WormBase Gene ID /WP=CE00133 /GEN=far-1 /TR=SW:P34382 /GB=CAA79616.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=O. volvulus 20Kd antigenic peptide
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066609 NCBI Caenorhabditis elegans Fatty Acid/Retinol binding protein family member (far-1) (far-1) mRNA, complete cds. 11/11 None
SNAP00000002183 ENSEMBL cdna:SNAP chromosome:CEL140:III:9080379:9081083:-1 11/11 None
GENEFINDER00000002187 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9080379:9081083:-1 11/11 None
F02A9.2.3 ENSEMBL cdna:known chromosome:CEL140:III:9080277:9081091:-1 gene:F02A9.2 11/11 None
F02A9.2.1 ENSEMBL cdna:known chromosome:CEL140:III:9080277:9081085:-1 gene:F02A9.2 11/11 None
F02A9.2.2 ENSEMBL cdna:known chromosome:CEL140:III:9080277:9081534:-1 gene:F02A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9080374-9081079(-) 100.0 100.0
Public Domain and Genome References
Gene Title O. volvulus 20Kd antigenic peptide
Gene Symbol far-1
Ensembl F02A9.2
Entrez Gene 176283 Entrez gene
SwissProt P34382 EMBL-EBI
WormBase CE00133 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79616 Hypothetical protein F02A9.2 [Caenorhabditis elegans] ref|NP_499010.1| Fatty Acid/Retinol binding protein family member (far-1) [Caenorhabditis elegans] sp|P34382|FAR1_CAEEL Fatty-acid and retinol-binding protein 1 precursor 2.0E-86
blast CAE62671 Hypothetical protein CBG06812 [Caenorhabditis briggsae] 7.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR008632 EMBL-EBI Nematode fatty acid retinoid binding 3.7E-103
Sequence
Target Sequence 
>C. ELEGANS:193651_S_AT
agtcccggaggtcccagagaactatgacgatatcccagctgaatacaagtcccttatccc
agccgaggtctccgagcatcttaagtccatcaccccagaagagaaggctattcttaagga
ggtcgccaagggatacaaggacttcaagagcgaggatgatttcttgaacgccctcaagga
aaagtctccaactctccacgagaaggcctccaagctccaccaaatcgtcaaggacaaggt
caacgctctcaatgatgaggctaaggctttcgtcaagaaggctatcgctgaaggacgtaa
gatccacgctcaatacttggccggagagaagccatccctcgacaccctcaagaccaccgc
caagacccacatcgaagcctacaagggactttcccaagatgccaaggactccatcgccaa
ggaattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCCCGGAGGTCCCAGAGAACTAT 98 59 69 Antisense
GAACTATGACGATATCCCAGCTGAA 684 349 87 Antisense
CTGAATACAAGTCCCTTATCCCAGC 149 237 107 Antisense
CGAGGTCTCCGAGCATCTTAAGTCC 364 247 132 Antisense
TTAAGTCCATCACCCCAGAAGAGAA 694 683 149 Antisense
CAAGCTCCACCAAATCGTCAAGGAC 442 185 279 Antisense
GGACAAGGTCAACGCTCTCAATGAT 65 527 300 Antisense
AAGATCCACGCTCAATACTTGGCCG 515 155 367 Antisense
CTTGGCCGGAGAGAAGCCATCCCTC 684 215 384 Antisense
GGGACTTTCCCAAGATGCCAAGGAC 139 495 453 Antisense
AAGGACTCCATCGCCAAGGAATTCC 101 159 472 Antisense
Sequence Source Affymetrix Proprietary Database