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[193646_s_at]

Description T02E1.3B /REP_DB=WormBase Gene ID /WP=CE18171 /TR=O02289 /GB=CAB04666.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Cluster 6grp_total > 98      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 23.4
(-1.8)
A 		9
(-3)
A 		25.1
(-1.7)
A 		84.1
(3)
A 		75
B 24.8
(-3)
A 		52.9
(-0.3)
A 		79.9
(2.3)
A 		87.6
(3)
A 		63
C 21.9
(-1.4)
A 		9.8
(-3)
A 		28.1
(-0.5)
A 		54.5
(3)
A 		45
avr 23.4
(-3) 		23.9
(-2.9) 		44.4
(-0.6) 		75.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 40.4
(-2.2)
A 		6.4
(-3)
A 		47.5
(-2.1)
A 		59.6
(-1.8)
A 		161.6
(0.6)
P 		267.7
(3)
P 		261
B 3
(-3)
A 		5.8
(-2.9)
A 		32.6
(-2.4)
A 		23.2
(-2.6)
A 		174.3
(0.6)
P 		287.1
(3)
P 		284
C 34.2
(-2.5)
A 		29.9
(-2.6)
A 		68.2
(-1.6)
A 		15.5
(-3)
A 		182.9
(1.5)
P 		239.4
(3)
P 		224
avr 25.9
(-2.7) 		14
(-3) 		49.4
(-2.2) 		32.8
(-2.6) 		172.9
(0.8) 		264.7
(3) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.5
(0.8)
A 		1.9
(-3)
A 		6.6
(-0.3)
A 		12.3
(3)
A 		10
B 7.9
(-3)
A 		13.1
(-0.1)
A 		18.5
(2.9)
A 		18.7
(3)
A 		11
C 7.2
(0.8)
A 		2.8
(-3)
A 		9.8
(3)
A 		9.2
(2.5)
A 		7
avr 7.9
(-1.4) 		5.9
(-3) 		11.6
(1.6) 		13.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 7.5
(-2.5)
A 		2.3
(-3)
A 		10.3
(-2.2)
A 		15.1
(-1.8)
A 		48.8
(1.4)
P 		65.2
(3)
P 		63
B 1.1
(-3)
A 		1.9
(-3)
A 		7.9
(-2.6)
A 		6.2
(-2.7)
A 		70.8
(0.9)
P 		107.1
(3)
P 		106
C 12.7
(-2.3)
A 		9.1
(-2.5)
A 		17.4
(-1.9)
A 		3.1
(-3)
A 		59.2
(1.4)
P 		80.2
(3)
P 		77
avr 7.1
(-2.8) 		4.4
(-3) 		11.9
(-2.4) 		8.1
(-2.7) 		59.6
(1.2) 		84.2
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193646_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1876
Sequence Type Exemplar sequence
Representative Public ID T02E1.3B NCBI
Target Description T02E1.3B /REP_DB=WormBase Gene ID /WP=CE18171 /TR=O02289 /GB=CAB04666.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059837(11), NM_059838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059837 NCBI Caenorhabditis elegans T02E1.3a (T02E1.3) mRNA, complete cds. 11/11 None
NM_059838 NCBI Caenorhabditis elegans T02E1.3b (T02E1.3) mRNA, complete cds. 11/11 None
SNAP00000000254 ENSEMBL cdna:SNAP chromosome:CEL140:I:8222535:8225698:1 11/11 None
GENEFINDER00000000261 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8222535:8225698:1 11/11 None
T02E1.3a ENSEMBL cdna:known chromosome:CEL140:I:8222535:8226110:1 gene:T02E1.3 11/11 None
T02E1.3b ENSEMBL cdna:known chromosome:CEL140:I:8222823:8225698:1 gene:T02E1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8222753-8225629(+) 100.0 100.0
Public Domain and Genome References
Ensembl T02E1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04667 Hypothetical protein T02E1.3a [Caenorhabditis elegans] ref|NP_492238.2| T02E1.3a [Caenorhabditis elegans] 0.0
blast CAB04666 Hypothetical protein T02E1.3b [Caenorhabditis elegans] ref|NP_492239.1| T02E1.3b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.1E-12
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.2E-10
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.8E-12
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.2E-10
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.5E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.2E-10
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.8E-12
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.2E-10
Sequence
Target Sequence 
>C. ELEGANS:193646_S_AT
gatgactcgttttcgatttggctcgagccgaagccgaaaaaacagtccggagccatgaca
cgaactcgcggagctgcgacgatcaacgaatcgagttctgcggcaagtctgctcacaaaa
atggatgctcttcgatcagacaagtatccaattacagacgaggaaatgatgatggctaat
gattttgtgagacaaggcgatcgagatgataaactaagctccagcgaaagctcaagtcct
gtcgtgatgtctttgatggaactattgagcaacgagaatctgctcgatcaagtagcaacc
gaaaaaccaaagtgttctatgttcgattttgatactctaaaaatcgccgaaactctcaag
gagccactgcaatcttccgaatgttcaactacaacatcaagcaagatgacctgctctcca
atgttctttttcgtagatgaaaagacaccaaactacgacggctcaggatcgaaaagcctt
ttcactccgtcatcatcggccggccagacgccttcattcctggaaccttgcgattttttt
gcagccaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGACTCGTTTTCGATTTGGCTCG 212 411 1456 Antisense
CAGTCCGGAGCCATGACACGAACTC 361 205 1498 Antisense
GCGGAGCTGCGACGATCAACGAATC 621 293 1523 Antisense
TTCTGCGGCAAGTCTGCTCACAAAA 54 695 1551 Antisense
GCTCCAGCGAAAGCTCAAGTCCTGT 43 299 1673 Antisense
AGTCCTGTCGTGATGTCTTTGATGG 12 61 1690 Antisense
GCCACTGCAATCTTCCGAATGTTCA 566 279 1818 Antisense
TCAAGCAAGATGACCTGCTCTCCAA 643 631 1852 Antisense
TGCTCTCCAATGTTCTTTTTCGTAG 237 581 1867 Antisense
CCTTCATTCCTGGAACCTTGCGATT 185 269 1966 Antisense
CCTTGCGATTTTTTTGCAGCCACCG 608 269 1981 Antisense
Sequence Source Affymetrix Proprietary Database