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[193641_at] Human plasma-cell membrane glycoprotein PC-1 like

Description C27A7.1 /REP_DB=WormBase Gene ID /WP=CE08403 /TR=P90754 /GB=CAB02784.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human plasma-cell membrane glycoprotein PC-1 like
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 46      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 51      6grp_total > 07      4grp_total > 14      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 587
1 2 3 4 range
A 810.5
(2.5)
P 		323.6
(-3)
P 		409.5
(-2)
P 		858.1
(3)
P 		535
B 763.6
(3)
P 		443.1
(-1.8)
P 		358.9
(-3)
P 		756
(2.9)
P 		405
C 645.6
(0.3)
P 		324.3
(-3)
P 		467.9
(-1.5)
P 		910.8
(3)
P 		587
avr 739.9
(1.7) 		363.7
(-3) 		412.1
(-2.4) 		841.6
(3) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 662.5
(3)
P 		410.5
(-2.2)
P 		374.2
(-3)
P 		505.9
(-0.3)
P 		404.9
(-2.4)
P 		467.9
(-1)
P 		288
B 646.4
(3)
P 		608.5
(2)
P 		471
(-1.7)
P 		546.8
(0.3)
P 		423.6
(-3)
P 		454.1
(-2.2)
P 		223
C 473.1
(0)
P 		603.1
(2.7)
P 		571.8
(2.1)
P 		616.7
(3)
P 		325.6
(-3)
P 		548.9
(1.6)
P 		291
avr 594
(3) 		540.7
(1.5) 		472.3
(-0.5) 		556.5
(1.9) 		384.7
(-3) 		490.3
(0) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 295.1
(3)
P 		70.2
(-3)
P 		107.1
(-2)
P 		125.6
(-1.5)
P 		225
B 243.5
(3)
P 		109.4
(-2)
P 		83.2
(-3)
P 		161.1
(-0.1)
P 		160
C 213.7
(3)
P 		93.2
(-3)
P 		163.1
(0.5)
P 		153.6
(0)
P 		121
avr 250.8
(3) 		90.9
(-3) 		117.8
(-2) 		146.8
(-0.9) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 122.1
(0.8)
P 		146
(3)
P 		81.5
(-3)
P 		128.3
(1.4)
P 		122.2
(0.8)
P 		113.9
(0)
P 		65
B 224.9
(3)
P 		202.5
(1.8)
P 		114.4
(-3)
P 		144.8
(-1.3)
P 		172.1
(0.1)
P 		169.3
(-0)
P 		111
C 175.3
(2.3)
P 		184
(3)
P 		145.5
(0.1)
P 		124
(-1.6)
P 		105.4
(-3)
P 		183.7
(3)
P 		79
avr 174.1
(2.7) 		177.5
(3) 		113.8
(-3) 		132.4
(-1.2) 		133.2
(-1.2) 		155.6
(0.9) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14519
Sequence Type Exemplar sequence
Representative Public ID C27A7.1 NCBI
Target Description C27A7.1 /REP_DB=WormBase Gene ID /WP=CE08403 /TR=P90754 /GB=CAB02784.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human plasma-cell membrane glycoprotein PC-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073643 NCBI Caenorhabditis elegans C27A7.1 (C27A7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12136156:12146826:1 11/11 None
C27A7.1 ENSEMBL cdna:known chromosome:CEL140:V:12134048:12139973:1 gene:C27A7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070584 3/11 Cross Hyb Matching Probes None
SNAP00000042920 4/11 Cross Hyb Matching Probes None
Y43D4A.7 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12134080-12139857(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human plasma-cell membrane glycoprotein PC-1 like
Ensembl C27A7.1
Entrez Gene 179663 Entrez gene
SwissProt P90754 EMBL-EBI
WormBase CE08403 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18776_AT type I phosphodiesterase/nucleotide pyrophosphatase family protein at
ATH1-121501:253698_AT type I phosphodiesterase/nucleotide pyrophosphatase family protein at
CANINE_2:CFAAFFX.980.1.S1_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 cfa
CHICKEN:GGAAFFX.1852.2.S1_S_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 1; phosphodiesterase I/nucleotide pyrophosphatase 1; plasma-cell membrane glycoprotein 1; alkaline phosphodiesterase 1; membrane component, chromosome 6, surface marker 1; Ly-41 antigen ... gga
HG-U95AV2:342_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HC-G110:342_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-U95AV2:343_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HC-G110:343_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-U133A:205066_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-U133_PLUS_2:205066_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-FOCUS:205066_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-U133A_2:205066_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HUGENEFL:D12485_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
U133_X3P:G13324676_3P_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
U133_X3P:HS.11951.0.S2_3P_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-U133A_2:205065_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-U133_PLUS_2:205065_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-U133A:205065_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
HG-U95D:71432_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 hs
MG-U74AV2:104174_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MOUSE430_2:1459546_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MOUSE430A_2:1459546_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MOE430A:1459546_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MU11KSUBA:C79507_RC_F_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MU11KSUBA:J02700_S_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MOE430A:1419276_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MOUSE430A_2:1419276_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MOUSE430_2:1419276_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 mm
MU19KSUBC:TC35222_AT Ectonucleotide pyrophosphatase/phosphodiesterase 1 allotype b (Enpp1) mRNA, Enpp1-b allele mm
MU19KSUBC:TC35222_G_AT Ectonucleotide pyrophosphatase/phosphodiesterase 1 allotype b (Enpp1) mRNA, Enpp1-b allele mm
RG-U34A:AB017596_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 rn
RG-U34C:RC_AA817968_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 rn
RAE230A:1370047_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 rn
RAT230_2:1370047_AT ectonucleotide pyrophosphatase/phosphodiesterase 1 rn
RAE230B:1378556_AT Ectonucleotide pyrophosphatase/phosphodiesterase 1 rn
RAT230_2:1378556_AT Ectonucleotide pyrophosphatase/phosphodiesterase 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9117 nucleotide metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02784 Hypothetical protein C27A7.1 [Caenorhabditis elegans] ref|NP_506044.1| C27A7.1 [Caenorhabditis elegans] 0.0
blast CAE75400 Hypothetical protein CBG23390 [Caenorhabditis briggsae] 0.0
blast CAE75401 Hypothetical protein CBG23391 [Caenorhabditis briggsae] 0.0
blast CAB02785 Hypothetical protein C27A7.3 [Caenorhabditis elegans] ref|NP_506046.1| C27A7.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506044.1 1 51-73
C27A7.1 1 51-73
Sequence
Target Sequence 
>C. ELEGANS:193641_AT
tctgtcattgtgtctcgtaagggaaatgatgctcggcgagcaataattgaagtcttatca
agagatgaagcttcgaacccttcaaatttcacttttctcaatgcaaaatatcaatctaat
tgtccgagccatattccgacgggaagtctaacgatacgtcaaaattcacaactcagcagt
atggtcgatgagcgcatcgatgttccaaataactttttattgaaagtactagatccacta
caagcaaaatcgatggaatatttaaacaaatttgggaaaatgtacgtaatatcgggaact
gcaacggatattaatcatgacggaattgctgattcaaatggatcagtcatcacacatatc
tatcgaattatgttgatctgcaattccacgtggcttttgatgaatcctccactttgcaca
gattcagattcaatggacacattatcttttatttttccaataaccgaacaatcaactata
gattgcatgagctcggatgacattcttcttgactacacagcgacgatttttgatgttgaa
agaatatctggtttccaattcggtattggtgctctaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGTCATTGTGTCTCGTAAGGGAA 338 607 1873 Antisense
AGCTTCGAACCCTTCAAATTTCACT 88 79 1941 Antisense
TTGTCCGAGCCATATTCCGACGGGA 553 707 1992 Antisense
GATGAGCGCATCGATGTTCCAAATA 678 411 2059 Antisense
GGATCAGTCATCACACATATCTATC 475 511 2212 Antisense
TTGATCTGCAATTCCACGTGGCTTT 508 701 2245 Antisense
GCTTTTGATGAATCCTCCACTTTGC 147 305 2265 Antisense
TCCTCCACTTTGCACAGATTCAGAT 522 593 2277 Antisense
GAGCTCGGATGACATTCTTCTTGAC 644 387 2361 Antisense
TCTTCTTGACTACACAGCGACGATT 333 615 2376 Antisense
AATTCGGTATTGGTGCTCTAAGCCA 470 177 2429 Antisense
Sequence Source Affymetrix Proprietary Database