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[193640_s_at] GATA-binding transcription factor like

Description K02B9.4 /REP_DB=WormBase Gene ID /WP=CE23844 /GEN=elt-3 /TR=Q21128 /GB=CAA93510.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=GATA-binding transcription factor like
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 32      6grp_total > 41      4grp_total > 47      6grp_highest_sub > 03_04      6grp_cgc > 60      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 741
1 2 3 4 range
A 1967.1
(3)
P 		1226.3
(-3)
P 		1450.1
(-1.2)
P 		1539.1
(-0.5)
P 		741
B 1769.3
(3)
P 		1312.3
(-3)
P 		1426.1
(-1.5)
P 		1480.7
(-0.8)
P 		457
C 1835.2
(3)
P 		1461
(-1.1)
P 		1284
(-3)
P 		1301.2
(-2.8)
P 		551
avr 1857.2
(3) 		1333.2
(-3) 		1386.7
(-2.4) 		1440.3
(-1.8) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 749
1 2 3 4 5 6 range
A 1226
(2.3)
P 		1216.9
(2.1)
P 		1264
(3)
P 		1201.4
(1.9)
P 		1196.4
(1.8)
P 		936.2
(-3)
P 		328
B 1114.5
(0.6)
P 		1028.2
(-0.4)
P 		1321.7
(3)
P 		1224
(1.9)
P 		1049.3
(-0.1)
P 		801
(-3)
P 		521
C 1231.3
(0.6)
P 		1177.8
(0.2)
P 		1532.5
(3)
P 		1320.9
(1.3)
P 		959.3
(-1.6)
P 		783.4
(-3)
P 		749
avr 1190.6
(0.9) 		1141
(0.4) 		1372.7
(3) 		1248.8
(1.6) 		1068.3
(-0.4) 		840.2
(-3) 		533
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 497
1 2 3 4 range
A 716.2
(3)
P 		266.2
(-2.5)
P 		379.1
(-1.1)
P 		225.3
(-3)
P 		491
B 564.2
(3)
P 		324.1
(-2.8)
P 		330.5
(-2.6)
P 		315.5
(-3)
P 		249
C 607.5
(3)
P 		420
(0.1)
P 		447.5
(0.5)
P 		219.4
(-3)
P 		388
avr 629.3
(3) 		336.8
(-1.7) 		385.7
(-0.9) 		253.4
(-3) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 226
(-3)
P 		432.8
(3)
P 		275.3
(-1.6)
P 		304.7
(-0.7)
P 		361
(0.9)
P 		227.9
(-2.9)
P 		207
B 387.8
(1.2)
P 		342.3
(-0.9)
P 		321
(-2)
P 		324.2
(-1.8)
P 		426.3
(3)
P 		298.7
(-3)
P 		128
C 456.4
(3)
P 		359.4
(0)
P 		390
(0.9)
P 		265.6
(-2.9)
P 		310.4
(-1.5)
P 		262.3
(-3)
P 		194
avr 356.7
(1.9) 		378.2
(3) 		328.8
(0.4) 		298.2
(-1.2) 		365.9
(2.4) 		263
(-3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193640_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17813
Sequence Type Exemplar sequence
Representative Public ID K02B9.4 NCBI
Target Description K02B9.4 /REP_DB=WormBase Gene ID /WP=CE23844 /GEN=elt-3 /TR=Q21128 /GB=CAA93510.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=GATA-binding transcription factor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077920 NCBI Caenorhabditis elegans Erythroid-Like Transcription factor family member (elt-3) (elt-3) mRNA, complete cds. 11/11 A 
SNAP00000032414 ENSEMBL cdna:SNAP chromosome:CEL140:X:13938746:13940635:1 11/11 None
K02B9.4 ENSEMBL cdna:known chromosome:CEL140:X:13938663:13941124:1 gene:K02B9.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032423 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032418 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13938745-13940635(+) 100.0 100.0
Public Domain and Genome References
Gene Title GATA-binding transcription factor like
Gene Symbol elt-3
Ensembl K02B9.4
Entrez Gene 181503 Entrez gene
SwissProt Q21128 EMBL-EBI
WormBase CE23844 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93510 Hypothetical protein K02B9.4 [Caenorhabditis elegans] ref|NP_510321.1| Erythroid-Like Transcription factor family member (elt-3) [Caenorhabditis elegans] gb|AAD33964.1| GATA transcription factor ELT-3 [Caenorhabditis elegans] 1.0E-125
blast CAA93510 Hypothetical protein K02B9.4 [Caenorhabditis elegans] ref|NP_510321.1| Erythroid-Like Transcription factor family member (elt-3) [Caenorhabditis elegans] gb|AAD33964.1| GATA transcription factor ELT-3 [Caenorhabditis elegans] 1.0E-122
blast CAE63063 Hypothetical protein CBG07341 [Caenorhabditis briggsae] 6.0E-95
blast CAE63063 Hypothetical protein CBG07341 [Caenorhabditis briggsae] 6.0E-94
blast AAF55262 CG10278-PA [Drosophila melanogaster] ref|NP_650516.2| CG10278-PA [Drosophila melanogaster] gb|AAO47880.1| LD08432p [Drosophila melanogaster] dbj|BAD00020.1| transcription factor dGATAe [Drosophila melanogaster] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 7.8E-18
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 7.8E-18
Sequence
Target Sequence 
>C. ELEGANS:193640_S_AT
gtggccaacacactactagatccatatgttcaacttgaccaaccgacctatgcggacttc
actaatgcacaggtactgaaccatcagcaagaaatgctccagatgaacttcccaacacca
ttatccacaagttatatgaatacagcacaagtcacacagacacatcaaatgccgttcaat
atttttgaattgaacctttcaaacttcgcaacattccaaccagcctgtgacactcccctt
ccacttctcaacagctcaccaacgcatccatacacaacaatgtcaaacttcacacctcca
ccgcaagacccgcttgtcgccgagccgaagccgatgaaaaaaagaatggcagctgtacaa
tgtcatcaaaattccatctgctcaaattgcaaaacacgtgagacgacgctgtggcgacga
aatggagaaggaggtgtcgagtgcaacgcctgcaatctctacttccggaaaaacaaccga
aaacgtccactgtctcttagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCCAACACACTACTAGATCCAT 143 493 91 Antisense
TTGACCAACCGACCTATGCGGACTT 349 703 125 Antisense
GCGGACTTCACTAATGCACAGGTAC 112 293 142 Antisense
GAAATGCTCCAGATGAACTTCCCAA 15 363 181 Antisense
TTCCCAACACCATTATCCACAAGTT 639 697 199 Antisense
CAAACTTCGCAACATTCCAACCAGC 601 189 290 Antisense
GAATGGCAGCTGTACAATGTCATCA 549 331 434 Antisense
TGTCATCAAAATTCCATCTGCTCAA 420 559 451 Antisense
ACACGTGAGACGACGCTGTGGCGAC 273 111 484 Antisense
TCGAGTGCAACGCCTGCAATCTCTA 80 603 527 Antisense
GAAAACGTCCACTGTCTCTTAGAAA 118 355 569 Antisense
Sequence Source Affymetrix Proprietary Database